Bradyrhizobium icense: LMTR13_15175
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Entry
LMTR13_15175 CDS
T04485
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bic
Bradyrhizobium icense
Pathway
bic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LMTR13_15175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bic03400
]
LMTR13_15175
Enzymes [BR:
bic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LMTR13_15175
DNA repair and recombination proteins [BR:
bic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LMTR13_15175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
ResIII
CarD_TRCF_RID
Cas3-like_C_2
UB2H
SecA_DEAD
RecG_dom3_C
AAA_22
AAA_30
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ANW01309
UniProt:
A0A1B1UEY1
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All DBs
Position
3256087..3259191
Genome browser
AA seq
1034 aa
AA seq
DB search
MVALHLLAQWKKSSRKGVVFLAENENRAERLGAVIHALAPSCDVLVFPRLNTLPFDQLEP
SHEIAGRRSSVLRRLAKPEKPILLVSTAEALMERLPTVASWSRVILRLKVGAAFSKQDLR
ARLEALGYDLDDEADYPGGALFHGKTFEIFPAGALGPFRVEHSGGVIRRIVAFDPIEHDI
VFETKELLIDPMSERLAFGNQRGKRSTMFDYCGRAKWIADTGVSAHADGWLSTIEEAAGR
ADREREYLGRREWKQATKRMNVLSQKASFVPTPDFSQVAPPRKALRAFVDDTRRAGSRLV
FVAAHEDDLRVLERMSGVKAERFVDWNEATAGRNREAALLADFDRGFVVPGRKPLVVVTA
SDVLGSRAHHPQPLVRAWSAAFDHADVPEQGTAVVHLQRGLALLDGLQTVAMGGGSSREM
IRLGFAGDDAVLVPPADLALIWPYASERGELTLDKADGSTWWSRRTEAEHEIQIAGKQLA
KHISQRRRRRAPKLVPPGPIYERFVARFPYFTTIDQAKAIRDVLDDLASGHPMDRIICGD
VGFGKTEVALRATAAVVLSGKQVAIAVPTTVLARQHVATFRKRFAPFGIEVGSLSRTGSG
AETREVKEGLKSGKLKIVVGTQALAAKDVKFAGLGLVVIDEEQHFGATEKARLSGLAKSI
HALWMSATPIPRTLAGGLAGFRDISVIASPPIHRLPVVTKVAPLSDAAIASALLREQRRH
GQSFLICPRIQDLDPMLARVQSVAPDLRIVCLHGKLPADDIDDRMMSFVEGATDVLLATN
IVESGLDIPRANTIVVCWPEKFGLAQLHQLRGRVGRSGIRAFAHLLTDSDSERSEKRLAV
LEEFNRPGAGFAISARDLDLRGAGDVLSERQSGHVQVFGPVLYSHLLKLASEKADDRTAD
LWVPDLNLPVGDMLPAGYVQSEAVRLEIYGRVARCRSEDELDDLEEETSRRFGRLPPAAR
DFFAAARLRIECRRRGIIRLDVGLDAVAATFLPGRLRKSKARSLQRDGDRVVYISNGREG
PLRTVEEFLDLLDV
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggtggccctccatctgctcgcacagtggaagaagtcgagccgcaaaggcgtcgtcttt
cttgctgaaaacgagaatagggccgagcggctgggtgccgtcattcatgccctcgcccct
tcgtgcgatgtgcttgtttttccaagactgaatacgctgccgttcgatcagctggagccg
tcgcatgaaatcgcgggtagacgaagctcggtcctgaggcgccttgccaagcctgagaag
ccgatcctgctcgtatccacggcagaggccctgatggagcgccttcccactgtggcgagt
tggtcccgggtcatcctccgtttgaaagtcggtgccgcgttctctaaacaagatctccgg
gcgcggcttgaggccctcggatacgacctcgatgacgaggcggactaccccggcggcgcg
ctgtttcacggcaagacattcgagatttttcccgccggcgccctcggtccgttcagagta
gagcattccggcggggtgatacgtcggatcgtggcgttcgacccgatagaacatgacatc
gtttttgagacgaaagagcttctcatcgacccgatgtctgagcggctggcgttcgggaat
cagcgcggaaagcgctcgactatgttcgactattgtggtcgggccaagtggatcgcggat
accggggtttcagcgcacgccgatggctggcttagcacgatcgaggaggcggccggtcgc
gctgacagagagcgcgaataccttggcaggcgcgaatggaagcaggcgaccaagcgtatg
aacgtgttgtcgcaaaaggcatctttcgttcccacaccggacttttcgcaggttgcaccg
cccaggaaggcgctccgtgcgttcgtcgacgatacgcggcgcgccggttcgcgactggtt
ttcgtcgcagcgcatgaggacgacctgcgcgtgctggaacggatgagcggagtcaaggcg
gagcgctttgtggattggaacgaggcgacggccggacgcaaccgtgaggcggcgcttctg
gccgacttcgacaggggttttgtcgtgcctggtcggaaacctcttgtcgttgtgacggct
tccgatgtgctcggcagcagggctcatcatccgcagcccctggtgagagcttggagtgcg
gctttcgaccacgcagatgtgccggagcaagggacagcggttgttcatttgcagcgaggg
ctggccttgctcgacggcttgcagaccgtggcaatggggggcgggtcgtcgcgcgaaatg
atcaggctcggatttgcaggagacgatgccgttctcgttccgcccgccgacctagccttg
atctggccatatgcgtcggagcgcggcgaactcaccctcgacaaagcggatggaagtaca
tggtggagccggcgtaccgaggcggagcacgaaattcagatcgccggcaagcagctcgcc
aaacacatcagccagcggcgccgccggcgggctccgaaacttgtacctcccggtcccatc
tatgagaggtttgtcgcgcgttttccgtatttcacgacaatcgaccaagcgaaagccata
cgggacgttttggatgatcttgcgtcaggccaccccatggacaggatcatttgcggcgac
gtcggattcggcaaaaccgaggtggcgttgcgagccacggccgccgtcgtattgtcaggg
aagcaggtggcgatcgcggtgccgacgaccgtcctggcaagacagcatgtcgcgactttc
cgcaaacgcttcgctccgtttggcatcgaagtggggagtttgtcgcgaaccggttcgggc
gcagagacaagagaggtgaaggaggggctgaagagtggcaaattgaagattgtagtcgga
acgcaggccctcgccgcgaaggacgtgaagttcgccggcctcggccttgtcgtcatcgat
gaggaacagcattttggggcgacggagaaggcgagactttccgggttggccaagagtatt
catgccctttggatgagcgccacgccgattccgcggactctcgcgggcggtcttgccggc
ttcagggatatcagcgtcattgcctctccgcccattcatcgactcccggtcgtcacaaag
gtcgctcctctttcggatgctgctattgcctccgcattgctgcgcgagcaaaggcggcac
gggcaaagcttcttgatctgtccgcgaattcaggatctcgatccgatgctggcgcgcgtt
caatcggtggccccggatctccgcatcgtctgtctgcatggcaagttgcccgccgacgac
atagacgatcgaatgatgagcttcgtcgaaggcgcgacggacgtgctgctggcgaccaac
atcgtggagagcggtctcgatatcccacgtgcaaacacgatcgtggtctgttggcccgaa
aagttcggtcttgcgcaacttcatcagctcagaggaagggtggggcgcagcgggatacgg
gcgtttgcgcatttgctgaccgattcggactcagagcgatctgagaagcgattggccgta
ctggaggagttcaacagacccggcgcgggtttcgcgatcagtgcgcgggatctggacctc
aggggagcgggggatgtgctttcagagcggcagtcgggccatgtgcaggtgttcgggccg
gtgctctacagccaccttctgaaattggcctcggagaaagccgacgacagaacagccgac
ctgtgggtgcctgacctgaatctgccggtcggggacatgttgcccgcaggctacgtgcaa
tcggaggcggttcggctggaaatctacggccgcgtcgccagatgccgaagcgaagatgag
ctggacgatctcgaggaagagacgtctcgtcgcttcggcagattgcctccggcggcccgc
gatttctttgccgcagcaaggctcagaatcgagtgcaggcgaagaggaatcataagactt
gatgtcggcctcgacgccgtggccgcgacattcctgccgggacgacttcggaaatccaag
gcgcggtccctgcaacgcgatggcgaccgggttgtctacatcagcaacggacgcgaggga
ccgcttaggacggtcgaagagttcctcgaccttctggatgtgtaa
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