Bradyrhizobium icense: LMTR13_19900
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Entry
LMTR13_19900 CDS
T04485
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bic
Bradyrhizobium icense
Pathway
bic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LMTR13_19900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bic03400
]
LMTR13_19900
Enzymes [BR:
bic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LMTR13_19900
DNA repair and recombination proteins [BR:
bic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LMTR13_19900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
SecA_DEAD
AAA_16
RecG_dom3_C
HTH_35
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ANW02095
UniProt:
A0A1B1UH76
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All DBs
Position
4219531..4223049
Genome browser
AA seq
1172 aa
AA seq
DB search
MKAPVKSPAALLAPGRALTFANVAEGAEGLVVSDLARAVAARPKPPAVSLAVVCRDGPRM
QQLARALEFFAPDLPVMQFPAWDCQPYDRVSPHGGILAQRLTTLARLSRLQGSDKPLIVL
TTVNAIVQRVPAREVVAAQALSVAPGHVVPMDSIVAWLEHNGYNRSSTVREPGEYAVRGG
ILDLFPAGLDQPVRFDFFGDSLESIRTFDAETQRTLLDMRALDLVPISEFQLVTETIRRF
RMGYVATFGAPERDDPLYEAVSEGRRHPGMEHWLPLFQERMDTLFDYLDGAPVAIEPQGE
DAARERFKQIADYYEARREALEHPGSGAIYKPLPPDRLYLTETEWTTRLSDAAVARLTPF
AVPEGTGDLFDAGARQGRNFTPERADTSVNVFEAVVAHVLALQAQRKKVVIALWSEGSRD
RMASMLRDHKLANITSVNAWRTVQATPRNEAMLAVVGMESGFETDEFAVISEQDILGDRL
VRQRKSSRKLDNFISEVTSLSTGDLVVHVEHGIGRFVGLQTIEVGGAPHDCLELHYAAET
KLFLPVENIELLSRYGSDHANVELDRLGGGGWQARKAKLKNRIREIAGELIKIAAERQLH
EAPKMPVQPHVYDEFCARFPYEETEDQLGAITSTLKDLETGRPMDRLICGDVGFGKTEVA
LRAAFAVALEGKQVAVVVPTTLLARQHSKNFAERFRGFPVNVAQASRLIPAKELTQVKKG
LAEGNVDIVVGTHALLGKSIKFRDLGLLIVDEEQHFGVSHKEKLKQLRAQVHVLTLSATP
IPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPR
IEDLAGVKDFLDKNVPEMKVAVAHGQMPPTVIEDIISAFYDGKYDILLSTTIIESGLDIP
NANTLIVHRSDMFGLAQLYQLRGRVGRSKLRAYALFTLPAQQKITAQAERRLKVLQSLET
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEEAILNLKAGVAEPAADRW
SPQITIGMPVLIPEDYVNDLSVRLSLYRRLADLDTDEEIDNFAAEMRDRFGVLPDEVRYL
FKVAAIKAYCRRANVEKVDAGPKGAVISFRDNSFAQPDRLVAFIRQHGQAAKVRPDMKVV
FLQTWKTPEERLMGTTEILRQLANLAESKKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcccccgtcaaatctcccgccgcgctgctggcccccggccgcgcgctgaccttt
gccaatgttgccgagggtgcggaggggcttgtcgtctccgacctcgcgcgtgcggtcgcc
gccaggccgaaaccgccggcagtcagccttgccgtggtctgccgcgacggtccgcgcatg
cagcaactggcgcgggcgctggaattcttcgcccccgatctgcctgtgatgcagtttccg
gcttgggactgccaaccctatgaccgggtatcgccgcatggcggtatcctggcgcagcgc
ctgaccacgctggcgcggctgtcgcgcctgcagggcagcgacaagccgctgatcgtgctc
accaccgtcaatgccatcgtgcagcgtgtgccggcgcgcgaagtggtggcggcgcaggcg
ctgtcggttgcgcccggccatgtcgtgccgatggattcgatcgtcgcctggctcgagcac
aatggctacaaccgctcctcgaccgtgcgcgagcccggcgaatatgccgtgcggggcggc
atcctcgatctgtttccggccgggctcgatcagcccgtgcggtttgacttcttcggcgac
tcccttgaatcgatccgcaccttcgatgcggaaacccagcgcacgctgctcgacatgcgc
gcgctcgatctggtgccgatctcggaattccagctcgtcaccgaaaccattcgccgcttt
cgcatgggctatgtcgcgaccttcggcgcgccggagcgtgacgatccgctctatgaggcc
gtcagcgagggacgccgccatcccggcatggagcattggctgccgctgttccaggagcgg
atggatacgctgttcgactatctcgacggcgcgccagtcgcgatcgagccgcagggcgag
gatgccgcgcgcgaacgcttcaagcagatcgcggactattacgaagcgcggcgcgaggcg
ctggagcatccgggttcaggtgcgatctacaagccgttaccgccggatcggctctatctg
acggaaacggagtggaccacgcggctgagcgacgccgcggtggcgcggttgacgccgttc
gccgtgcctgagggcactggcgatttgttcgacgccggcgcgcggcagggccgcaacttt
acgcctgagcgcgccgacacttccgtcaacgtgttcgaagccgtggtggcgcatgtgctg
gcattgcaggcgcagcgcaagaaagtggtgatcgcgctgtggagcgaaggctcgcgcgac
cgcatggccagcatgctgcgggatcacaagctcgccaatatcaccagcgtcaacgcctgg
cgcaccgtgcaggcgacgccgcgcaacgaggccatgctggcggtggtcggcatggagagc
ggtttcgagaccgacgaattcgccgtcatcagcgagcaggatatcctcggcgaccgtttg
gtgcgtcagcgcaaatcgagccgcaagctcgacaacttcatctccgaagtcacgagcctt
tcgacgggcgatctcgtggtgcatgtcgagcacggcatcgggcgctttgtcggcttgcag
acgatcgaagtcggcggcgcgccgcacgactgtctggagctgcattatgccgccgaaaca
aaactgttcctgccggtcgagaacatcgagctgttgtcgcgctacggctccgaccacgcc
aacgtggagctggaccggctgggcggcggcggctggcaggcacgcaaggccaagctgaag
aaccggatccgcgagatcgcgggcgagctgatcaagatcgcggccgagcggcaactgcac
gaggcgccgaaaatgccggtgcagccgcatgtctatgacgaattctgtgcgcgcttcccc
tatgaagagaccgaggatcagctcggtgccatcacgtccacgctgaaagaccttgaaacc
ggccgccccatggaccggctgatctgcggcgacgtcggtttcggcaaaaccgaggtggcg
ttgcgcgcggcgtttgctgtggcgctcgaaggcaagcaggtcgcggtggtcgtgccgacc
acgctattggcgcggcagcacagcaagaactttgcggaacgcttcagaggtttcccagtc
aatgtcgcgcaggcctcgcgcctgatcccggccaaggagctgacgcaggtcaagaaaggg
ctggccgaaggcaatgtcgacatcgtcgtcggcacccacgcgctgctcggcaagtcgatc
aagttcagggatcttggcttgctgatcgtcgacgaagagcagcactttggcgtcagccac
aaggaaaagctgaagcaattgcgggcgcaggtacatgtcttgacgctgagcgcgacgccg
atcccgcggacgctgcagcttgcgctgaccggcgtgcgcgagctgtcgatcatcgcatcg
cccccggtcgatcgcctcgcggtgcgcaccttcgtggcgccgcacgatcccctgatgatc
cgcgaggcgctgctgcgcgaacgctaccgcggcgggcaggcgttctatgtggtgccgcgg
atcgaagaccttgccggcgtcaaggacttcctcgacaagaacgtgccggagatgaaggtt
gcggttgcgcatggccagatgccgccgaccgtgatcgaggatatcatatcggccttctat
gacggcaagtacgacatcctgctttcgaccacgatcatcgaatccggcctcgacattccg
aacgccaatacgctgatcgtgcaccgctcggatatgttcgggctggcgcagctctatcag
ttgcgcggacgggtcgggcgctcgaagcttcgcgcctacgcgctgttcacgttgccggcg
cagcagaagatcaccgcgcaagccgagcggcggctgaaggtgctgcagtcgctggaaacg
ctgggcgcggggttccagctcgcatcgcacgacctcgatatccgcggcgcgggcaacctg
ctcggcgaagaacaatccggccacatcaaggaagtcggtttcgagctctatcaatcgatg
ctggaggaggcgatcctcaacctcaaggccggcgtggccgagcccgccgcggatcgctgg
tcgccgcagatcaccatcggcatgcccgtgctgatccccgaggattacgtcaacgatctc
tcggtgcggctgtcgctgtaccgtcggctggcggacctcgacaccgacgaggagatcgac
aacttcgccgccgagatgcgcgaccgttttggcgtgctgccggacgaagtccgctatctc
ttcaaggtcgcggccatcaaggcctattgccgccgagccaacgtcgagaaagtcgatgcc
gggccgaagggcgccgtgatctcgttccgcgacaacagcttcgcccagccggatcgcctg
gtcgccttcatccgtcagcacggccaggccgcgaaggtccggcccgacatgaaggtggta
ttcctgcagacatggaagacgccggaagagcggctcatgggcacgaccgagatattgcgg
cagctcgccaatctcgcggagagcaagaaggcggcgtag
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