Bradyrhizobium icense: LMTR13_21255
Help
Entry
LMTR13_21255 CDS
T04485
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bic
Bradyrhizobium icense
Pathway
bic03410
Base excision repair
bic03430
Mismatch repair
bic03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LMTR13_21255
03430 Mismatch repair
LMTR13_21255
03440 Homologous recombination
LMTR13_21255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bic03400
]
LMTR13_21255
DNA repair and recombination proteins [BR:
bic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LMTR13_21255
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LMTR13_21255
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LMTR13_21255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
ATPgrasp_N
Motif
Other DBs
NCBI-ProteinID:
ANW02323
UniProt:
A0A1B1UHS4
LinkDB
All DBs
Position
complement(4499953..4501794)
Genome browser
AA seq
613 aa
AA seq
DB search
MILPASALPVELPPAFLGVARSATGKLWRDRLDARGAALALAITQRYQVPEMLARVLAGR
DVGIDEVLDFLDPTIRKLMPDPHTVTAMETAAKRIADAAMRGEKVAIFGDYDVDGATSAA
LLAWHLRHCGLDPLIHIPDRIFEGYGPNVDAVRALAAKGATLLVTVDCGTTSIEPLAEAR
KLGLSVVVIDHHQTGDELPEVDALVNPNRPDDLSGLGHLAAVGLVLITLVAVNRELRRRG
FWSAELPEPDLLGMLHHVALGTVADVAPLIGLNRAFVAKGLIAMRRRDHVGHTALMDVAR
LNGPPEAWHLGFMLGPRINAGGRIGRADLGVRLLLEGDVSEAARIAAELDRLNSERRVIE
QAAEAQAEAEALASLGLEDKGAVIVTAAEGWHPGIVGLVASRLKEKFARPAFAIALEPGG
IGTGSGRSISGVDLGKAVRQALKDRILMKGGGHAMAAGVTLRKEKLAEFRAFMESALAED
VANSRHENELFIDGAVSARAVTVEFANTLNRAGPFGAGNPEPVIALPAHQLVYADEVGQA
HLRVRFKSGDGAIVNGIAFRSVGQKLGHALTQNRGQLLHVAGSLAVDRYQGSERVQFRVL
DVAVPDPGPTVIR
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgatcctccccgcatccgcgcttcccgttgaactgccgccggcgtttctcggcgtggcg
cgttcggcgaccggtaaattgtggcgcgaccggctcgacgccaggggggcggcgctggcg
ttggcgatcacccagcgctaccaggtgccggagatgctggcccgcgtgctggcgggccgc
gatgtcgggatcgatgaggtcctggattttctcgacccaaccatccgcaagctgatgccc
gatccacacaccgtgacggcgatggagacggcggccaaacgtatcgcagacgcggccatg
cgcggggaaaaggtcgcgatcttcggcgattacgacgtcgatggcgcgacctcggcggcg
ctgctcgcctggcatctgcgccattgcgggctcgatcccttgatccacatccccgaccgc
atttttgaaggctatggccccaatgtcgatgcggtgcgggcgctggccgccaaaggcgcg
acgctgctggtgaccgtcgattgcggcaccaccagcatcgagccgttggcggaagcgcga
aagctcggcctatccgtcgtcgtcatcgatcatcaccagaccggcgatgaattgcccgag
gtcgacgcgctggtgaatccgaaccggccggacgatctttccgggcttggtcatctggcg
gcggtcggcctggtgctgatcacgctggtggcggtgaaccgggaattgcgccgtcgcggc
ttctggagcgcggagctgccggagccggaccttttgggcatgctgcaccatgtggcgctc
ggcaccgtggcagacgtcgcgccgctgatcgggctgaaccgcgccttcgtcgccaagggg
ttgatcgcgatgcgccgccgcgaccatgtcggccataccgcgctgatggacgtggcgcgg
ctgaacggcccgccggaagcctggcatctcggcttcatgctggggccgcgcatcaatgcg
ggcggccggatcgggcgcgccgatctgggcgtgcggctcttgctggagggcgacgtctcg
gaggccgcgcggatcgcggccgaactcgaccggctgaacagcgagcgccgcgtcatcgag
caggcggccgaagcgcaggccgaggccgaggcgctggcctcgctcgggctcgaagacaag
ggcgcggtgatcgtgaccgccgccgaaggctggcaccccggcatcgtcggcctcgtcgcc
tcgcggctgaaggagaaatttgcgcggcccgcttttgccattgcgctggagccgggcggc
atcggcaccggctccggccgctcgatctcgggtgtcgatctcggcaaggccgtgcggcag
gcgctgaaggaccgcatcctgatgaagggcggcggccatgccatggcggccggcgtgacg
ctgcgcaaagagaagctcgcggagtttcgtgccttcatggaaagcgcgctggccgaggac
gtcgccaattcccgccacgagaacgagctgttcatcgacggtgccgtcagcgcccgcgcc
gtgaccgtggaattcgccaatacgctgaaccgcgccgggccgttcggggcgggcaatccg
gagccggtgatcgcgctgccggcgcatcagctcgtctatgccgacgaagtcggccaggcg
catctgcgcgtgcgcttcaagtcgggcgacggtgccatcgtcaacggcatcgcgttccgc
tcggtcggacagaagctcggacacgcgctgacgcagaaccgcggccagcttttgcacgtg
gcaggatcactcgcggtcgatcgctaccagggttcggagcgcgtgcagtttcgggtgctc
gatgtcgcggtgccggatccgggaccgaccgtgatcaggtaa
DBGET
integrated database retrieval system
