Bradyrhizobium icense: LMTR13_21530
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Entry
LMTR13_21530 CDS
T04485
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bic
Bradyrhizobium icense
Pathway
bic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMTR13_21530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bic03019
]
LMTR13_21530
03009 Ribosome biogenesis [BR:
bic03009
]
LMTR13_21530
Enzymes [BR:
bic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LMTR13_21530
Messenger RNA biogenesis [BR:
bic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LMTR13_21530
Ribosome biogenesis [BR:
bic03009
]
Prokaryotic type
rRNA processing factors
LMTR13_21530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ANW05750
UniProt:
A0A1B1USI6
LinkDB
All DBs
Position
4566785..4569922
Genome browser
AA seq
1045 aa
AA seq
DB search
MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEESENRSSHRRRSRHRNAR
RRGHGDRVQSDVVEGGSEDRSQAAQPYEGQENLQDNFQDQNFEEHLHEPEALQAGDTSAH
DAEQHDAEHRAEVALEAHDREARGDEQARDGDRPAHDHDEREQAHTASEAPVAEVQSDAS
APASVPDPVSVEAAEAPEEHGHDDRHDEERAQENAAHADDVPHVEHVGDYTPPPDEPAAA
LEADDGQDDEDDGEDAEEEVVESVGGDDVLEEVPERPFRPRRQYKIQEVIKRRQVMLVQV
VKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEG
MGIILRTAGASRTKPEIKRDFEYLIRMWETVRDMTLKSQAPTLVYEEGSLIKRSLRDLYN
KEIDEIQVAGEAGYQEARDFMKMLMPSNVRAVRQYRDGQPLFSRMGVESQLDAMFSPTVQ
LRSGGYIVINQTEALVSIDVNSGRSTREHHIEDTALKTNLEAAEEVARQLRLRDLAGLIV
IDFIDMDEKRNNRAVERKLSDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTEPC
PQCGGSGHVRSVSSVALQLLRGIEEILMKGATHNLVVRTRTDVALYVLNHKRGHLRDLEN
AFKVSLAVVADATVSGQQSYVIDRGEQVHTLEAAKALLAAQATAFPPQVEEAYDDDEAFD
IESEIETEETEGLTDDAAEAAVGEGEGDGHRRKRRRRRRGRGEPREGGAPREDGDAMRVA
GETVESAIAEDGDADEDEGDEQAGMVRGDQLASGERRPRRRGRRGGRRRRGTGPEDGLAG
SIADELGPTSAPEASDAVADFDGGSSEPAPSLMQTDIQPEPVSLPAEMQPAAEAHPEPAA
SAPAPSAEETRQEAERAAARRRSTVREKVSFLTSAPAEPAPSVGQNEPEPIAPPAPAPVE
PTPAPASEAAPRKAGWWSRRFGSGE
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaagatgttaatcgacgccacccacccggaagagacccgggtcgttgtggtc
cgcggcaaccgcgtcgaagaatttgatttcgagaccgcccaacgcaagcagctccgcggt
aatatctatctcgccaaggtcacgcgcgtagaaccgtcgctgcaggcggcgttcatcgaa
tatggcggcaaccgccacggtttcctggcgttcagcgaaatccacccggactactatcag
atcccggtcgccgaccgtcaggcgctgatcgaggccgacgagcgcgcccatcgcgaggcc
gaggaagagagcgagaaccgctccagccaccgccgccgttcgcgccatcgcaatgcgcgc
cgccgcggccatggcgaccgcgtccagagcgacgtggtcgagggtggcagcgaggatcgc
tcgcaggccgcccagccctatgaaggccaagaaaatcttcaagacaattttcaagaccag
aattttgaggaacatctgcacgagcctgaggccttgcaggccggcgatacatcggcgcac
gacgccgaacagcacgacgccgaacatcgcgccgaagtcgctcttgaagcacacgaccgc
gaggcgcgtggtgacgagcaggcgcgtgatggcgaccgccccgcacatgatcacgacgaa
cgcgaacaggcgcataccgcgagcgaagcgccggtcgcggaggtgcaatccgatgcgtct
gcccctgcttcggtacctgaccctgtttcggtagaagccgccgaagcgccggaggagcac
ggccacgacgatcgtcatgacgaagagcgtgcgcaggaaaacgccgcccatgccgacgac
gtgccgcatgtcgagcacgtcggtgattataccccccctcccgatgaacctgccgcggct
ctggaagcggacgacggccaggacgatgaggacgatggcgaggacgccgaagaggaggtc
gtcgaatccgtcggtggcgacgacgttctggaagaagttccggagcgcccgttccggccg
cgccgtcagtacaagatccaggaagtcatcaagcgccgccaggtgatgctggttcaggtc
gtcaaggaagagcgcggcaacaagggcgcggcgctgacgacctacctctcgctggccggc
cgctatgccgtcctgatgcccaacaccgcccgcggcggcggcatcagccgcaagatcacc
tctgcccaggaccgctcgcggctgaaggaagtggtgcaggacctcgacgtgcccgagggc
atggggatcatcctgcgcaccgccggcgcctcgcggaccaagcccgagatcaagcgcgac
ttcgagtacctgatccgcatgtgggaaaccgtgcgcgacatgacgctgaagtcgcaggcc
cccaccctcgtctacgaggaaggctcgctgatcaagcgctcgctgcgcgacctctacaac
aaggaaatcgacgaaatccaggtcgctggcgaagccggctatcaggaagcccgcgatttc
atgaagatgctgatgccctcgaacgtgcgggcggtgaggcaatatcgcgacggccagccg
ctattctcgcgcatgggcgtcgagagccagttggacgcgatgttctcgccgaccgtgcag
cttcgttccggcggctacatcgtcatcaaccagaccgaggcgctggtctcgatcgacgtc
aactcgggccgctcgacccgcgagcatcacatcgaggacaccgcgctcaagaccaatctg
gaggcagcggaggaagtcgcccggcaactacgtctgcgcgatctcgccggcctcatcgtc
atcgacttcatcgacatggacgagaagcgcaacaaccgcgcggtcgagcgcaagctctcc
gactgcctgcggcaggatcgcgcgcgcatccaggtcggacgcatctcgcatttcggtctt
ctggaaatgtcgcgccagcgcatccgcgccagtgtgctggagagctcgaccgagccctgc
ccgcaatgcggcggcagcggtcacgtccgctcggtctcttcggtcgcgctgcaattgttg
cgcggcatcgaggaaatcctgatgaagggcgcgacccacaatctggtggtgcgcacccgc
accgacgtggcgctctatgtgctcaaccacaagcgcggccacctgcgcgatctcgaaaat
gccttcaaggtttcgctggccgtcgtcgccgacgccaccgtgagcggccagcagtcatat
gtcatcgatcgcggcgagcaggtgcatacgctcgaagccgccaaggcattgctggcggcg
caggctaccgccttcccacctcaggtcgaggaggcctatgacgacgacgaggcgttcgac
atcgaatccgagatcgaaaccgaggagacggaggggctgaccgacgatgcagccgaggca
gcggtgggcgaaggcgaaggagacggtcaccgccgcaagcggcgccggcggcggcgcggc
cgtggcgaaccgcgtgaaggcggcgccccgcgcgaggacggtgacgcgatgcgcgttgcc
ggcgagaccgtcgaaagcgcgatcgccgaagacggcgatgccgacgaggatgaaggcgac
gaacaggccggcatggtgcgtggcgatcaacttgccagtggcgaacggcgtccgcgccgc
cgtggccgtcgcggcggacgccgccggcgtggtaccggaccggaagatggtctggccggg
tcgatcgcagacgaactcgggccgacctcggctccggaggcaagcgacgcggttgccgat
ttcgacggcggttcgtccgagcccgcgccatcgctgatgcagactgacattcagcccgaa
ccggtctcgctgccggcggagatgcagcctgcggccgaagcccacccggagcccgctgcg
agcgcgcctgcgccaagcgctgaggaaaccaggcaagaggcggagcgtgccgccgcgcgg
cggcgttcgaccgtgcgcgagaaggtcagcttcttgaccagcgctccggccgaaccggcg
ccctccgtcggccagaacgagccggagccgatcgcgccccccgcgcccgctccagtcgaa
cctacgccggctccggccagcgaagccgcgccacgcaaggcgggctggtggtcgcggcgc
ttcggcagcggcgagtaa
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