Bradyrhizobium icense: LMTR13_35215
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Entry
LMTR13_35215 CDS
T04485
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bic
Bradyrhizobium icense
Pathway
bic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMTR13_35215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bic03019
]
LMTR13_35215
Enzymes [BR:
bic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LMTR13_35215
Messenger RNA biogenesis [BR:
bic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LMTR13_35215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
AAA_22
SUa-2TM
P-loop_SecA
CMS1
DUF8086
Utp25_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ANW06128
UniProt:
A0A1B1UTW3
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All DBs
Position
7585871..7587298
Genome browser
AA seq
475 aa
AA seq
DB search
MTSFQDFGLADPISRALKEENYHTPTPIQAQTIPIALTGRDVVGIAQTGTGKTAAFALPI
LHRILENRIRPQPKSCRVLVLSPTRELSGQILDSFNAYGRHIRLTSALAIGGVPMGRQVR
SVMQGVEVMVATPGRLLDLVQSNGLKLNQVEFLVLDEADRMLDMGFINDIRKVVAKLPIK
RQTLFFSATMPKDIAELAESMLRDPARVAVTPVASTADRIAQRIIQVDFAAKPAVLAQLL
KQEPVDRALVFTRTKHGADKVVKVLTKAGIEANAIHGNKSQNHRERVLAAFRSGEIRTLV
ATDIAARGIDVDGISHVVNFDLPNVPETYVHRIGRTARAGAEGVAISLIAGAEEMGYLRD
IERLIRIALPREDRRTPGRSDAAPAPAQHRGGRSAPRAHTVRSNDAGQPSKGPRRRRRGG
GNNAPPQPNRHEGPRPAQQGGKSQAGHSEGIQGVAFLHRESRPNNQPNRSHRTQR
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
ttgacctcctttcaggatttcggccttgccgatcccatctcgcgtgcgctcaaggaagag
aattaccacacgcccacgcccatccaggcccagaccatccccatcgcattgaccggccgt
gacgtcgtcggcatcgcccagaccggcaccggcaaaaccgcggcgtttgcgctgccgatc
ctccaccggatcctggaaaaccgcatccggccgcagccgaagagctgccgcgtgctggtg
ctgtcgccgacccgcgaactgtcaggccagatcctcgacagcttcaatgcctatggccgc
cacatccgcctgacctcggcgctcgcgatcggcggcgtgccgatgggccgccaggtccgc
tcggtcatgcagggcgtcgaagtgatggtggcgacccccggccgcctgctcgacctcgtc
cagagcaacgggctgaagctgaaccaggtcgagttcctggtgctcgacgaagccgaccgc
atgctcgacatgggcttcatcaacgacatccgcaaagtcgtcgccaagctgccgatcaag
cggcagacgctgttcttctcggccaccatgccgaaggatatcgcggaactcgccgaatcc
atgctgcgcgaccccgcccgcgtggcggtgacgccggtggcctcgacggccgaccggatc
gcccagcgtatcatccaggtcgatttcgcggccaagccggcggtgctggcgcagctcctg
aagcaggaaccggtcgatcgcgcgctggtgtttacccgcaccaagcacggcgccgacaag
gtggtgaaggtactgaccaaggccggcatcgaagccaacgccatccacggcaacaagtcg
cagaaccaccgggaacgcgtgctggcagcgttccgctccggcgagatccgcacgttggtc
gccaccgatatcgccgcccgcggcatcgatgtcgacggcatcagccatgtggtgaatttc
gacctgcccaatgttcccgaaacctatgtccaccgcatcggccgcaccgcgcgcgccggc
gccgagggcgttgcgatctcgctgatcgcgggcgccgaggaaatgggctatctgcgcgac
atcgagcgactgattcgcatcgcactgccgcgggaagaccgccgcacgcccggcagaagc
gacgccgcgccggcgcctgcccaacaccggggtggacgctcggcgccacgtgcccatacc
gtgaggtccaatgacgcgggccagccttcaaaaggccctcgccgacgccgccgcggtggt
ggtaataatgcgccgccgcagccgaaccggcacgaagggccgcgtccggcgcagcagggc
ggcaagagccaggccggccacagcgaaggcattcagggcgtcgccttcttgcatcgcgag
agccgtccgaataatcaaccgaaccgtagccaccgaacgcagcgctag
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