Beijerinckia indica: Bind_0452
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Entry
Bind_0452 CDS
T00688
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
bid
Beijerinckia indica
Pathway
bid03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Bind_0452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bid03400
]
Bind_0452
Enzymes [BR:
bid01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Bind_0452
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Bind_0452
DNA repair and recombination proteins [BR:
bid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Bind_0452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ACB94105
UniProt:
B2IE81
LinkDB
All DBs
Position
508434..509300
Genome browser
AA seq
288 aa
AA seq
DB search
MPELPEVETVRRGLAPVMVGASFTTVEQRRADLRFPFPDNFAARLEGRRVEALGRRAKYL
LADLDDAQVLVMHLGMSGSFRIEKAGDLASPPPGKNAAHDHVVFGLSTGTRIIYNDPRRF
GFMHLIARQDLAGHPLFRNVGIEPLGNELEGALLARLFAGKTTPLKTALLDQTLIAGLGN
IYVCEALHRAGLSPRRAAGTLAGKKGQPTERAHRLSEIIRAVLEEAIEAGGSSLRDHRQA
DGALGYFQHRFRVYDREAEPCPREGCGGTIKRIVQAGRSTFFCAKCQR
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgcctgaagtcgaaaccgtccgccgggggctggcgccggtcatggtcggg
gcttccttcacgactgtagagcagcgacgggccgatcttcgctttccctttccggacaat
ttcgcggctcgccttgagggtcgccgtgtggaagcgctcggccgccgcgccaaatatctg
ctcgccgatctcgatgatgcgcaagtgctggtcatgcatctcggcatgtccggttcgttt
cgcatcgagaaggcgggcgatctcgcctccccgcctcctggcaagaacgctgcgcatgat
catgtggtcttcgggctttcgacgggcacgcgcatcatttacaatgatccacgccgtttc
ggtttcatgcatttgatcgcgcgccaggacctggcggggcatcctttgttccgcaatgtc
ggcatcgagccgctcggcaatgagctcgaaggggccttgctggcgcgattgtttgcaggc
aagacgacgccgctcaagaccgcgctgctcgatcagaccctgattgccggcctcggcaat
atttatgtatgcgaggctttgcaccgggcggggctttcaccgcgccgggcggcggggacg
ctcgccggcaagaagggccagccgacagagcgcgcgcatcgtctttccgaaatcatccgc
gcggttttggaagaagcgatcgaggcgggcggttcatccttgcgcgatcatcgccaagcc
gatggcgcgctcggctatttccagcaccgtttccgtgtctatgatcgggaagcagagccc
tgcccgcgagaggggtgtggtggcacgatcaagcgtatcgtgcaggccggacgatcgacg
ttcttttgtgccaaatgccagcggtga
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