Beijerinckia indica: Bind_0894
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Entry
Bind_0894 CDS
T00688
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bid
Beijerinckia indica
Pathway
bid03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bind_0894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bid03400
]
Bind_0894
Enzymes [BR:
bid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bind_0894
DNA repair and recombination proteins [BR:
bid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Bind_0894
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_16
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACB94543
UniProt:
B2IHM2
LinkDB
All DBs
Position
1017855..1021376
Genome browser
AA seq
1173 aa
AA seq
DB search
MTDFKRAVAELAKGGSLTLASVADGYDAFCLADLIHACARAGEERSVVLVHVARDSTRAR
AFGEALAFAAPDVEILDLPSWDCQPYDRVSPNAAIAAKRMMVLARLARSRSSLERPRILS
TTVNALVQRLPPLRFIAANTFSAAPGNAVALDGLAAWLETNGFARSSTVRDTGEYAVRGG
IVDLYAPGMAQPVRLDFFGDTLESIRSFDPETQRTIGQLRALDLVPMSEVQLTTETIRHF
RQAYVARFNAQTRGDTLYETISEGRRHPGCEHWLPLFYDHLDTLFDYVGGAPFVLDPQAE
EAAKQRLAQIKDYYEARKSAYDADPAHVAYKPLPPDALYQTPEQWGKTLSLTSLVRISPF
AVPPDSSRGPVVDLNSKPGRSFAAERADPEANVFEAALTHVRALQGAGKRVILAAWTDGS
RERLAHVMADHGLKDQETISSFTQAQALKPSTVALGVIGLEQGFEAEGLAVVGEQDILGD
RIVQTRRKVRRAQDFLSEVASLQAGDLVVHVEHGIGRFIGLQTIEAAGVRHDCLELHYAE
GTKLFLPVENLELLSRYGSEESDVPLDRLGGGAWQKRKARMRRHILEMASGLIKVAAARE
TREAPKLVPPEGLYAEFCSGFPYEETEDQQATIDSVLEDLSSGKPMDRLVCGDVGFGKTE
VALRAAFDTAINGKQVAVIVPTTLLARQHYKNFSARFAHLPVTVAQMSRMVSAADLKAAK
AGISSGNVDIIVGTHAVLGKGITFKDLGLVIIDEEQHFGVKHKERLKELRAEVHVLTLSA
TPIPRTLQLAMTGVRDLSIIATPPVDRLAVRTFISPFDDLLVREALLRERYRGGQSFYVA
PRIEDLEDVATYLRTHVPEVKFVVAHGQMAATELEDKMAAFYEGKYDVLLSTAIVESGLD
IPTANTLIVHRADMFGLAALYQLRGRVGRSKIRAYALFTVPPNKTLTPQAERRLKVLSSL
DTLGAGFQLASHDLDIRGAGNLLGDAQSGHIKEVGYELYQQMLQEAVEALKSGIEAPVEE
AWSPTITLGTPVTIPEDYVPDLQLRLTLYRRLSTIESEAEIESFAAEMIDRFGPMPKEVE
QLMQLVAIKLLCRKAHVEKVDAGPKGVIIGFRDNAFANPQGLVRYVAQQGSEAKVRADMK
IVFSRDFANPNVRLEGTKQLVRTLAAIAMKQAA
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatttcaaacgcgccgtcgccgaactcgctaagggcggctccctgactttggct
tccgtggccgatggctacgacgccttttgcctcgccgatctgattcatgcctgtgcccgt
gccggcgaggaacgctccgtggtgctggtgcatgtggcgcgtgacagcacgcgggcgcgg
gcctttggcgaggctctggcctttgcggcgccggatgtcgaaatcctcgacctgccgtcc
tgggattgccagccttatgaccgcgtctcgccaaacgcggcgattgccgccaaacggatg
atggtgctggcgcgtctcgcccgttcgcgctcctccctggaacggccgcgcattctctcg
accaccgtcaatgccttggtccagcgcttgccgcccttgcgcttcatcgccgccaatact
ttttcagccgcgcccggcaatgccgtcgcgctcgatggccttgcggcctggctcgagacc
aatggctttgcacggtcctcgaccgtgcgggataccggcgaatatgcagtgcgcggcggc
attgtcgatctttacgcgcccggcatggcgcagccggtccggctcgatttctttggcgat
acgctggaatccatccgttccttcgatccggaaacccagcgcaccattggccaattgcgc
gcgctcgatcttgtgccgatgagcgaggtgcaactgaccaccgagacgatccgccatttc
cgccaggcctatgtcgcgcgtttcaatgcgcagacgcgcggcgatacgctttatgagacg
atcagcgagggacgaaggcacccaggctgcgaacattggctgcctctgttctacgaccat
ctcgatacattgttcgattatgtcggcggcgcgcctttcgtactcgatccgcaggccgag
gaagcggcgaaacaacggctcgcgcagatcaaggattattatgaggcccgcaaatcggcc
tatgacgccgacccggcccatgtggcctataagcctctgccgcccgatgcactttatcag
acgccggagcaatggggcaaaacgctgtccctcaccagcctcgtgcgcatttcgcccttc
gccgtgccgccggattcttcgcgcggccctgtcgttgatctgaattccaaacccggacgc
agtttcgccgccgagcgggccgatcccgaggccaatgtgttcgaggccgcgctgacccat
gtgcgggccctgcaaggcgcgggcaagcgcgtgatcctcgccgcctggacggatggctcg
cgtgagcggcttgcccatgtcatggccgatcatggcctcaaggatcaggaaacaatttcc
tccttcacccaggcgcaggcgctgaaaccctccaccgtggcgctcggcgtcatcggcctg
gaacagggttttgaggcggaagggcttgccgtcgtcggcgagcaggacattctgggcgac
aggatcgtgcagacgcgccgcaaagtccgccgcgcccaggatttcttgagcgaggtcgcc
tcgttgcaggcgggcgatctggtggtccatgtcgaacatggcatcggccggttcattggc
ttgcagaccatcgaggcggcgggcgtgcgccatgattgcctggaactgcattatgccgaa
ggcacaaagcttttcctgcccgtcgaaaatctcgaattactttcgcgctatggctcggaa
gaatccgatgtcccgcttgaccgtctcggcggtggcgcctggcagaagcgcaaggcgcgg
atgcgccggcatattctcgaaatggcctctggtctcatcaaggttgccgccgcgcgcgag
acaagggaagcgccgaaactggtgccacccgaagggctctatgccgaattctgttcaggt
ttcccttacgaggaaaccgaggaccagcaggccaccatcgactcggttctggaggatctt
tcctcgggcaagccgatggaccgccttgtctgcggagatgtcggtttcggcaagacggaa
gtggcgctccgcgccgccttcgacacggcgatcaatggcaaacaagtcgccgtcatcgtg
ccgacgactctcttggcccgccagcattacaagaatttttcagcccgtttcgcgcatctg
ccggtcacagtcgcgcaaatgtcgcgcatggtctccgccgccgatctcaaagccgccaag
gcaggcatttcctcgggcaatgtcgatattatcgtcggcactcatgccgtgctgggcaag
gggatcacgttcaaggatctcggcctcgtcatcatcgacgaggaacagcattttggggtc
aagcacaaggaacgcctaaaggaactccgcgccgaagtgcatgtgctgaccctttcggca
acgccgatcccgcgcacgctgcagctcgccatgaccggcgtgcgtgatctctcgatcatc
gccacgccgccggtcgatcgtctggccgtgcgtaccttcatttcgcccttcgatgatctt
ttggtccgcgaagctctgttgcgcgagcgttatcgcggcgggcagagtttttatgtcgcc
ccgcgcatcgaagatctcgaggatgtcgcgacatacctgcgcacccatgtgccggaggtc
aaattcgtggtcgcgcatggacaaatggcggcgaccgagctcgaagataaaatggccgcc
ttctatgagggcaaatatgatgtgctgctctcaaccgccattgtcgaatccggtctcgat
attccaaccgctaacactttgatcgtgcatcgcgccgatatgttcggccttgccgcgctc
tatcaattgcgtggccgcgttggccgctcgaaaatccgcgcttacgcgctcttcactgtg
ccgccgaataagaccctgacgccacaggccgagcggcggctgaaagtgctgtcctcgctc
gacacgttgggtgcgggcttccagcttgccagccacgatctcgatattcgcggcgccggc
aatctgctcggcgatgcgcaatcgggccatatcaaggaagtcggctatgaactctatcag
caaatgttgcaggaggcggtcgaggccctgaagtcgggcatagaggcgccggtcgaggaa
gcctggtcgccgaccatcacgctcggcacgccggtcacgattccagaagattatgtgccc
gatctgcaattgcgtctgacgctctatcgccgcctctcgaccatcgaaagcgaggcggaa
atcgaaagtttcgccgccgaaatgatcgaccgttttgggcccatgccgaaggaggtcgag
caattgatgcagctcgtcgccatcaaactattgtgccgcaaggcgcatgtggaaaaagtg
gatgcgggccccaagggcgtcatcatcggcttccgcgacaatgctttcgccaatccgcaa
gggcttgttcgctatgtcgcgcagcaagggtctgaggccaaggtgcgcgcggatatgaag
atcgtcttctcccgcgatttcgccaatcccaatgtcaggctggaaggcacgaaacagctc
gtgcgcacactcgcggccatagccatgaaacaggcggcatga
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