Beijerinckia indica: Bind_0931
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Entry
Bind_0931 CDS
T00688
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bid
Beijerinckia indica
Pathway
bid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bind_0931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bid03019
]
Bind_0931
03009 Ribosome biogenesis [BR:
bid03009
]
Bind_0931
Enzymes [BR:
bid01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Bind_0931
Messenger RNA biogenesis [BR:
bid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bind_0931
Ribosome biogenesis [BR:
bid03009
]
Prokaryotic type
rRNA processing factors
Bind_0931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACB94580
UniProt:
B2IHQ6
LinkDB
All DBs
Position
complement(1063055..1066072)
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AA seq
1005 aa
AA seq
DB search
MANKMLIDASHPEETRVVVLRGNRVEEFDFESASKKQLRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVVDRQALIEEEARAQHEEDEEPQAPRRSRRYRRGDRNG
QRAAEKRRNEDDVLALSPVLPEAVEPAPDQAEMTDEPQAFYTADSTDHFPHFENGAVETP
DADETQADEPFLFPPHETTAEELQPSFQSSFPASEEEPADFTRHEQREVSSDENDEAPSE
ELPFNATELAGTAVAAPEAIPTRDDFGNDFNDDEGDEGDETEEEDEQVEQIGGDSDAMEE
AMHRAPRYRRQYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARG
GGISRKITDAGDRQRLKAIAQELEVPEGMGVILRTAGAARTKAEVKRDFEYLLRMWETVR
EMTLKSTAPTLVYEEGSLIKRAIRDLYNKDIDEIIVSGEAGYREAKDFMRMLMPSHAKSV
QLYRDPQPIFAKAGAEAQLDAMFSNQVTLRSGGYLVINQTEALVAIDVNSGRSTREHNIE
DTAVRTNLEAADEIARQLRLRDLAGLIVADFIDMEEGRNNRAVERRLKEALKNDRARIQV
GRISHFGLLEMSRQRIRTGVFEGSTVICPHCLGAGMVRSTSSIALHVLRLLEDALIKNAA
YDITVKTRTVIALYILNQKRTNLRELEQRFGVSITVAADESLTGMTYHALERGELASGTK
LPVRETAIGPADIFPLDEEEEIEMEAEELEPVSGSDEGSNEDEEATAEAEGETEADGRAR
RRRRKRRRGGRGSDREGSGIAANAPQPSDDALGLIAGMSPYAAADDENAAAFTASEAEET
RDEETEGAETVEAKGEDIAPAPNRRPRRSRSRGPRRANAEAAESSAGSATETAISQEPFE
PESSLPSTGAEAEHLAPSQPVELSHAEDFAPVLSPAAPEEPHIVESVPVAPVALPMIVPE
QGSTALVPVEAEAETASITPPVEESGPPQPKRSGWWQRAKASLRG
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaaaatgcttatcgatgcctcccatccggaagagacccgggtggtggttctg
cgtggtaatcgcgtcgaggaattcgatttcgaatccgccagtaaaaaacagcttcgcggc
aatatctatcttgccaaagtcacccgggtcgagccgtccctgcaggccgctttcgtcgac
tatggcggcaatcgccatggcttcctggccttttccgaaatccacccggattattatcag
attcctgtcgtcgaccgtcaggctttgatcgaagaagaggcacgcgcccaacacgaagaa
gatgaggagccacaggctccacgccgcagccggcgctatcgccgcggtgaccgcaacggc
cagcgcgccgccgagaaacggcgcaatgaagacgacgtgctggccctatcccccgtcttg
cccgaagcggttgaacccgcgcccgaccaggcggaaatgaccgacgaaccgcaagccttt
tacacggcggattcaacggatcattttccccatttcgagaacggagcggtagagacaccg
gacgccgacgagacgcaggcggacgaaccctttctcttcccgccccacgaaaccactgcg
gaggagttacaaccgagcttccaatcgagcttcccggcaagcgaggaggagcccgccgat
ttcacgcgccacgagcagcgggaagtctcaagcgacgagaacgacgaagcgccttcggag
gagctccccttcaacgcaacggaattggccggcacggctgtggccgccccggaagcaatt
ccgacacgcgatgatttcggcaacgatttcaatgacgacgagggagatgaaggggacgag
accgaggaagaagacgagcaggtcgagcagatcggcggcgacagcgatgccatggaagaa
gccatgcatcgcgccccccgctatcgccggcaatataagattcaagaggtcatcaagcgg
cgccagatccttctcgtccaggtggtgaaggaagaacgtggcaacaaaggcgccgcgcta
accacttatctttcgctcgccggacgctattccgtcctgatgccgaatacggcccgtggc
ggcggcatttcccgcaagatcaccgatgcgggcgaccggcagcggctgaaggccatcgcc
caggaactcgaagtgccggaaggcatgggcgtcatcctgcgcacggctggcgccgcgcgc
accaaggccgaggtcaagcgcgatttcgaatatctcctgcgcatgtgggaaaccgtgcgc
gaaatgaccttgaaatccacggccccgaccctcgtctatgaagaaggatcgctgatcaag
cgcgccatccgcgatctctacaataaggatatcgacgaaatcatcgtctcgggcgaggct
ggctatcgcgaggccaaggacttcatgcgcatgctcatgccgagccatgccaaaagcgtc
cagctctatcgcgatccgcaaccgatctttgccaaggcaggtgccgaggctcagctcgac
gccatgttctcgaaccaggtcaccttgcggtcgggcggttatctcgtcatcaaccagacc
gaggcgcttgtcgcgatcgacgtcaattccggccgctcgacgcgcgaacataatatcgag
gacacggccgtccgcaccaatctcgaggctgccgatgaaatcgcccggcaattgcgcctg
cgcgatctcgccggtctcatcgttgccgatttcatcgacatggaggaaggccgcaacaat
cgcgcggtggaacgccggttgaaggaagccctcaagaacgatcgcgcccgtattcaggtc
ggacgcatctcgcatttcggcctgctcgaaatgtcacgccagcgcatccgcaccggcgtt
ttcgagggctcgaccgttatatgtccgcattgcctcggcgccggcatggtgcgttcaacc
agctcgatcgccctgcatgtgctgcggctgctcgaggatgcgctgatcaagaatgccgcc
tatgacattaccgtcaagacgcgcacggtcatcgcgctctatatcctcaatcagaaacgc
acgaatctgcgcgaattggagcaacgtttcggagtgagcatcacggtcgcggcggacgag
agcctgaccggaatgacctatcacgctttggaacgcggcgaactcgccagcggcaccaag
ctgcccgtgcgggaaacagctatcggaccggccgatatcttccctctcgacgaggaagaa
gagatcgaaatggaggccgaggagctggaacccgtctccggttcggatgagggttcgaac
gaggacgaggaagccaccgccgaagccgagggtgaaacggaggccgatggccgcgctcgc
cgtcgccgtcgcaagcgccgccgtggcgggcgtggcagcgaccgggaagggtcaggcatt
gccgccaatgcaccgcaaccgtccgatgatgccttgggcctgatcgcaggcatgtcgcct
tatgccgctgcggatgacgaaaacgccgcggccttcacagcgagcgaagcagaggaaact
cgcgacgaggaaaccgaaggtgcggagaccgtggaggcaaagggcgaggacatagccccc
gcgccgaaccgcaggccgcgccgttcccgctcacgcggaccaagacgggccaatgcggaa
gcggccgagtcatcggcaggttcagcgacagagacggcgatttcgcaggaaccttttgag
ccagaaagctcgcttccatcaacaggtgccgaagctgaacacttggctccatctcaacct
gtggagctgagccacgccgaagattttgcccccgtgctatccccggctgcaccagaggaa
ccgcatattgtggaaagcgtcccggttgctccggtggccttgcccatgatcgtgcccgag
caagggagcacggcgcttgtgcccgtcgaagcggaagcggaaacggcctcgatcacgccc
cccgttgaggaaagcggtccgccgcaacccaaacgctccggctggtggcaaagagccaag
gccagtctgcggggctga
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