Beijerinckia indica: Bind_3416
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Entry
Bind_3416 CDS
T00688
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bid
Beijerinckia indica
Pathway
bid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bind_3416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bid03019
]
Bind_3416
03016 Transfer RNA biogenesis [BR:
bid03016
]
Bind_3416
Enzymes [BR:
bid01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Bind_3416
Messenger RNA biogenesis [BR:
bid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bind_3416
Transfer RNA biogenesis [BR:
bid03016
]
Prokaryotic type
tRNA degradation factors
Bind_3416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
RNase_II_C_S1
HTH_Crp_2
NPFF
Motif
Other DBs
NCBI-ProteinID:
ACB96973
UniProt:
B2IEN3
LinkDB
All DBs
Position
complement(3875299..3877674)
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AA seq
791 aa
AA seq
DB search
MRKTAVPPSYTASDAETSPGAGRLPSRADLIAFIAREREAQGDKVPAKIGKREIARAFDI
KGDDRIALKRMLRELEAEGAIERRRRVLHQPGRLPAVVLAEIFSRDRDGDLLASPVEWDA
SLGPIPKIAISAPRKPRANMPAPGLGDRALVRVEAVPDPAPHEPTYTGRLIKLLPRARTQ
VLGLFRADPLGGGGRIVPIDKKSLGRGELQVSEADRGEAEDGDLVAVEPLRSGRLGLPSA
RVRERIGAFSSEKAVSLIAIHAHGLPHIFPSEVLAEAESKKNVGLAGREDWRELPLVTID
PPDAKDHDDAVYADYDPDPANVGGTILSVAIADVAAYVRLGGALDKEAQERGNSVYFPDR
VVPMLPERISNDLCSLRPGEDRPALAVRMVIAADGHKLSHTFHRVIMRSAAKLSYAQAQA
AIDGAPDDVTEPLLETVLRPLYAAHECLKKARAKRGPLDLDLPERKIKLDEAGRVERIFT
PARLDAHKLIEEFMILANVCAAETLEAHHQPLIYRTHDEPTIEKLNALAEFLHTIDIKLA
KGQVLRPAQFNGILAQVRETEHEHLVNEIVLRTQAQAEYVTENYGHFGLNLRRYAHFTSP
IRRYADLIVHRALISALKFGSDGLPNTDPHVLAEIAAKISAAERRAMAAERETVERLIAI
HLADQVGAQFEGRISGVTKSGLFIRLMDSGADGFVPISSLAQDYFRHDEARHALIGSRTG
LMHRLGDLVTVRLVEAAPLAGALRFELIDGGALAPRSKGRNGSAKGSAKRSFDPKAEEAL
AKKNIKRSRRR
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
gtgaggaaaacagctgtgcctccctcttataccgcctccgatgcggagacctcgccgggc
gcgggacgcctgccgtcgcgcgccgatcttatcgcctttatcgcgcgtgagcgcgaagcg
cagggcgataaagtaccggccaagattggcaaacgggaaatcgcccgtgccttcgatatc
aagggggatgatcgcatcgccctgaagcgaatgttgcgagaactcgaagcggagggcgcg
atcgagcggcgacgccgcgtgctgcaccagccgggacgcctgcccgcggtggttctcgcc
gagatcttttcccgcgaccgcgatggtgatcttctggcaagcccggtcgaatgggatgcc
tcgctcggcccaatacccaaaatcgctatatcggcgccgcgcaagccgcgcgccaatatg
ccagctccaggtcttggcgatcgcgccctggtgcgggtcgaggcggttcctgatccagca
ccccatgagcctacctataccggccgcctgatcaagcttctgccacgcgccagaacacaa
gtgctcggcctcttccgagccgatccgctgggcggtggtggccgtatcgtgccgattgat
aaaaagagtctcggccggggcgaattacaggtttccgaggccgatcgcggtgaggcggag
gatggtgatctcgttgccgtcgagccgctgcgctcgggccgtcttggcttgccgagcgcg
cgcgtgcgcgaaagaatcggcgccttttcctcggaaaaagcggtgagcctgatcgctatt
cacgcgcatggcctgccgcatattttcccgtccgaagtgctggcggaagccgaaagcaaa
aagaatgttggccttgcagggcgcgaggattggcgcgaactgccgttggtgaccatcgat
cctccagatgccaaggatcatgacgacgccgtttatgctgactatgatcctgatcccgcc
aatgtgggcggcacgattttgagtgtcgccatcgccgatgtcgccgcttatgtccgcctt
ggcggggcgcttgacaaggaagcgcaggagcgcggcaattcggtctattttcccgatcgc
gtcgttcccatgttgcccgagcggatttccaacgatctgtgttcgttgcgtcccggcgag
gatcggccagcgctcgccgtgcgcatggtcatcgccgccgatgggcacaagcttagccac
acctttcatcgcgtaataatgcgctcggcggcgaaattgtcttatgcgcaggcgcaggcc
gcgatcgatggcgcgcctgatgatgtgacagagcctttgctcgaaacggtcttgcggcct
ctgtatgcggcgcatgaatgtttgaaaaaggcacgcgccaagcgagggccactcgatctc
gatctgccggaacgcaagatcaaactcgatgaggctggtcgcgtcgaacggatttttacc
cccgcccggctcgatgcgcataaattgatcgaggaattcatgatcctcgccaatgtatgc
gcggcggaaacgctggaggcgcatcatcagcctttgatctatcgcacacatgacgagccg
acgatcgaaaagctcaacgcgctcgccgaatttctgcatacgatcgatatcaagctcgcc
aagggccaggtgctgcggccggcgcaattcaatggtattctggcgcaggtgcgcgaaacc
gagcacgaacatctcgtcaacgagatcgtgttgcgcacgcaggcccaggcggaatatgtt
actgaaaattacgggcatttcggtctcaatctgcgccgttacgcgcatttcacctcgccg
attcgccgctatgccgatctcatcgtgcatcgcgccctgatcagcgccctgaaattcggc
tccgatggcttgccgaatacggatccgcatgttcttgccgaaatcgcggccaagatttca
gcggctgaacgccgtgccatggccgccgagcgcgagaccgtggaacggctgatcgccatt
cacctcgctgatcaagtcggcgcgcaattcgagggccgcatttccggcgtcaccaaatcc
ggcctgttcatccgcctcatggactcaggggccgatggtttcgtgcccatatcgagcctt
gctcaggattatttccggcatgatgaagcaaggcacgccttgatcgggtcgcgcaccggc
ctcatgcatcggctgggtgatctcgtcaccgtccggctcgtcgaggcagcgccgctggca
ggcgcgctgcgtttcgaactcatcgacggcggcgctcttgcgccacgctcgaaaggccgg
aatgggtccgccaagggatctgcgaagcgcagcttcgaccccaaagcggaagaggcttta
gccaagaaaaacatcaaacgcagccgccggcgctga
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