Beijerinckia indica: Bind_3417
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Entry
Bind_3417 CDS
T00688
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bid
Beijerinckia indica
Brite
KEGG Orthology (KO) [BR:
bid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bid03032
]
Bind_3417
03400 DNA repair and recombination proteins [BR:
bid03400
]
Bind_3417
Enzymes [BR:
bid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Bind_3417
DNA replication proteins [BR:
bid03032
]
Prokaryotic type
DNA Topoisomerases
Bind_3417
DNA repair and recombination proteins [BR:
bid03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Bind_3417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
ACB96974
UniProt:
B2IEN4
LinkDB
All DBs
Position
complement(3877727..3880612)
Genome browser
AA seq
961 aa
AA seq
DB search
MNVVIVESPAKAKTINKYLGKDYEVFASFGHVRDLPPKDGSVDPDHDFAMLWDVDTKSAK
RLADIAKAVKEADRVILATDPDREGEAISWHVLEVLKAKKVLKDKPVERVVFNAITQSAI
LDAMRHPRAIDIDLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCER
ELEIERFVPREYWSLTAFLRTPADQPFSAKLVGADGKKINRLDIGAGAEAEAFKAALETA
KFTVAKVEAKPARRNPAPPFTTSTLQQEAARKLGLAPARTMQLAQRLYEGIDLDGETVGL
ITYMRTDGVDLAPEAITGARKVIAAEYGDKYVPQAPRRYQVKAKNAQEAHEAIRPTDLAR
LPKHVARFLDAEQARLYDLIWTRTIASQMESAELERTTVDILAEVGARRLDLRATGQVVR
FDGFLKLYQEGRDDEEDEEGGRLPAMQVGDPLKKDRIEASQHFTEPPPRFTEATLVKRME
ELGIGRPSTYASTLAVLKDREYVRIDKKRLIPEDKGRLVTAFLESFFGRYVGYDFTADLE
SSLDKISNHEIDWKQVLRDFWADFSGAIADTKDLRTTQVLDSLNEVLGPYIFPDKGDGSN
PRACPSCANGQLSLKLGKFGSFIGCSNYPECKFTRTLSDTGPEGGNGETDRPGVKVLGVD
AETGEEISLRDGRFGAYVQRGEGEKPKRASLPKTIAPADLTLDMALGLLSLPREVARHPE
THEPILAGIGRFGPYVQHGKTYANIGKDEDILTLGANRAIDLIIAKESGLTGRRFGKGES
APARVLGDHPEGGQVTIKAGRFGPYVNYGKLNATLPKDADPTTLTLEEGLALLAAKASGQ
GGGKGAVQGQLLGEHPSGGPITVREGRFGPYVNHGKVNATLKSGLSPETLTLEEAIRLID
EKAGAASKKAPAKKAPAKKASGKTTTTEKAPAKKAASKAATAKTTKAKAAKSSEPDEEPP
F
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtcgtcatcgtcgaatcgccggcgaaggccaagaccatcaataaatatctcggc
aaggattacgaagtttttgcctcgttcggtcatgtccgcgatttgccgcccaaggatggt
tcggtcgatcccgaccacgacttcgccatgctttgggatgtcgacaccaaatccgccaaa
cggctcgccgacatcgccaaggcggtgaaggaggccgaccgggtgattctcgccaccgac
cctgaccgtgagggcgaggcgatttcctggcatgtgctggaagtgctcaaggccaaaaag
gtcctgaaggataagccggtcgagcgtgtggtgttcaatgcgatcacccaatcggcgatt
ctcgacgccatgcggcatccgcgcgctatcgacattgatctcgtcgatgcctatctcgcg
cgccgggcgcttgattatctcgtcggcttcaatctttcgccggtgctttggcgcaaattg
ccgggggcgcgttcggctggccgcgtgcaatcggtcgccttgcgtctcgtctgcgagcgc
gaattggagatcgaacgcttcgttccgcgggaatattggtcgctcacggcctttctgcgc
acgcccgctgatcagcccttttccgcgaaactcgtcggcgcggacggcaaaaagatcaac
cggctcgatattggcgcgggcgccgaagccgaagccttcaaggcggcgctcgaaacggcc
aaattcacggtggccaaggtcgaggccaagcccgccagacgcaatcccgcgcctcctttc
actacatcgaccttgcaacaggaggcggcgcgcaaattggggcttgcaccagcgcgcacc
atgcaattggcccagcgcctttacgaaggcatcgatctcgatggcgagacggtgggcctc
atcacttatatgcgaaccgatggcgttgatctggcaccggaagcgatcactggcgcgcgg
aaagtgattgccgccgaatatggcgataaatatgtgccgcaggcaccgcgccgctatcag
gtcaaggccaagaatgcccaggaggcgcatgaggcgatccgaccgaccgatcttgcccgc
ctgccgaaacatgtcgctcgttttctcgatgcggagcaggcgcggctttatgatttgatc
tggacccgcaccattgcgagccaaatggaatcggccgaactggagcggaccacggtggat
attctggccgaggttggtgcgcgccggctcgatcttcgcgccactgggcaggtggtgcgt
ttcgacggattcctgaaactctatcaggaaggccgcgacgacgaagaggatgaagagggt
ggccgcctaccggccatgcaggtcggcgaccccttgaaaaaggacaggatcgaggcgagc
cagcatttcaccgagccgccaccgcgctttaccgaggcgacgctcgtcaagcgcatggag
gaacttggcataggccggccctcgacctatgcctcgacgctcgccgtcctgaaagatcgc
gaatatgtgcggatcgacaagaaacggctgattcccgaggacaagggacggctcgttacg
gcttttctcgaaagcttctttggccgctatgtcggctatgatttcaccgccgatctggaa
tcaagcctcgacaagatttccaatcacgagatcgattggaaacaggtcctgcgcgatttc
tgggccgatttttctggcgccatcgccgacaccaaggatttgcgcaccacacaagtcctc
gatagcctcaatgaagtgctcggtccctatattttccccgataagggggatggctccaat
ccgcgcgcctgtccttcttgcgcaaatggccaattgtcgctgaagctcggcaaattcggt
tctttcatcggctgttccaattatccggagtgcaaattcacccgcactctttcggatacg
gggccggagggaggcaacggcgaaacggatcgtccgggtgtcaaggtgctgggggtcgat
gccgaaacaggcgaggagatttcgctgcgcgatgggcgctttggtgcctatgtgcagcgc
ggcgaaggcgaaaagcccaaacgcgcctccttgcccaagacgatcgcgccggccgatctg
acactcgacatggcgctcgggcttctttccctgccgcgcgaggttgcgcgccatcccgaa
acccatgagccgattctggcgggcatcggccggtttggtccctatgtccagcatggcaag
acctatgcgaatatcggcaaggacgaggatattctgacccttggcgccaatcgcgccatc
gacctcatcattgccaaagaaagcgggctcaccggtcgccgtttcggcaaaggcgaatcc
gcgcctgcccgtgttttgggtgatcatcccgaaggggggcaggtcacgatcaaggccggg
cgctttggtccctatgtcaattacggcaagctcaacgcgaccttgccgaaagacgccgac
cccaccacattgacgctggaggaaggcttggccttgctcgccgccaaggcgagtggtcaa
gggggaggaaaaggcgcggtgcagggccaactcctcggcgagcacccttcgggcggtccc
attaccgtgcgggaaggccgttttgggccttatgtcaatcacggcaaggtcaatgcgacc
ttgaaatccggtctctcgccggaaactttgacgctcgaagaggccatccgcctgattgac
gagaaggccggagccgcatccaaaaaggcccctgcgaagaaggcgcccgcaaagaaagcc
tctggcaagacgacgaccaccgagaaagcgcccgcgaaaaaggctgcaagcaaggcagca
acggccaaaaccaccaaggccaaagcggcgaaatcatcggagccggatgaagaaccccct
ttttaa
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