Beijerinckia indica: Bind_3491
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Entry
Bind_3491 CDS
T00688
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bid
Beijerinckia indica
Pathway
bid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bind_3491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bid03019
]
Bind_3491
03400 DNA repair and recombination proteins [BR:
bid03400
]
Bind_3491
Enzymes [BR:
bid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bind_3491
Messenger RNA biogenesis [BR:
bid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bind_3491
DNA repair and recombination proteins [BR:
bid03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Bind_3491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
ACB97048
UniProt:
B2IFE8
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All DBs
Position
complement(3966649..3968556)
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AA seq
635 aa
AA seq
DB search
MQTKPDLDEARRVLQEVFGFADFRPGQAEILQAVLDGDDILAIMPTGAGKSLCYQLPALL
RPGLTVVVSPLIALMRDQVEQLKQRGVPAAALNSTNSGQDNAMIEAALLKGRYRLVYVAP
ERFVRADTLSMLRRAGADLLAIDEAHCVSQWGHDFRPEYRALGESLVALGRPQIVAVTAT
ADGPTRAEIMERLFPAEPRQFIRSFDRPNLRLAMQRKHKPVQQILAMIARHKGESGIIYC
ASRKGVEKLTEILSAQGIFALPYHAGLAPEIRAAHQDMFVRHENVVIVATIAFGMGIDKP
DVRFVCHADLPGSIEAYYQEIGRAGRDGLPADTLTLFGEADIRLRERQIEDNDAAPERKR
LDRRKLQELIALCETPRCRRQTLLAAFGEQSEPCGNCDICEGRWPLFDGVVAAQKVMSAI
LRTSGRFFSGHLAHLLIGHATEAIKRHSHDLLPTFGVGREFTLSEWRSIFHQLHALNLIE
QDEEDRDRWCLTQGGRAVLRGEAELTLRGEMALPTGRSADIRKSLREIESGAEADYADRD
LAQKAFTREPPQISSADLTIHETRLFVALKAERLSLAKAQKQPPYVIFHDAVLVEIARRA
PRDEAQLLEIHGIGPAKAARYGEAMLAVVARHEQA
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
ttgcagacaaagcccgatctcgatgaagcccggcgcgtcttgcaagaggtttttgggttt
gctgattttcgtccggggcaggctgagatcctgcaagccgtgctcgatggcgacgatatt
ctcgccatcatgccgacgggagctggcaaatcgctctgctaccaattgccggctctgctg
cggccgggtttgacggtcgtggtttcgccgctgatcgctctcatgcgcgatcaggtcgag
cagttgaagcagcgcggcgttccggcggcggctttgaattcgaccaatagcggccaggac
aatgccatgatcgaggcggccctgcttaagggtcgttatcgccttgtctatgtcgcgccg
gagcgtttcgtccgcgccgatactttatccatgctgcggcgcgcaggcgccgatctgctc
gccatcgatgaggcccattgcgtttcgcaatgggggcatgatttccggccggaatatcgt
gccttgggcgaaagcctcgtggcgctcggccggccgcagattgtcgccgtcaccgcgacc
gccgatgggccgacgcgcgctgaaatcatggagcggctgtttcccgccgaaccccggcag
ttcatccgctctttcgaccggcccaatttgcggctcgccatgcagcgcaagcataagcct
gtgcaacagatcctggcgatgatcgcccgccacaagggagagagcggcattatctattgc
gcctcgcgcaagggcgtcgagaaactgaccgagatcttgagcgcgcaaggcatatttgcg
ctgccctatcatgcgggcctggcgcccgaaatccgggcggcgcatcaggatatgttcgtg
cgccatgagaatgtggtcattgtggcgaccatcgctttcggcatggggatcgacaagccg
gatgtgcgctttgtctgccatgccgatctgccgggcagtatcgaggcctattatcaggaa
atcggccgcgccggccgcgatggcctgcctgccgacacgctgactttgttcggtgaggcc
gatatccgtctgcgtgagcgccagatcgaggacaacgacgccgcgcccgaacgcaaaagg
ctcgaccggcgcaaattacaggagctgatcgcgctttgtgagacgccgcgttgccgccgc
cagactttgctcgcggcctttggcgaacagtctgaaccttgcggcaattgtgatatttgt
gagggccgctggcccttgttcgatggcgttgtcgcggcgcaaaaagtcatgtcggcgatt
ctacggacatcgggccgtttcttttccggtcatctcgcccatctgctgattggccatgcg
accgaggcgatcaaacgccatagccacgatcttttgccgactttcggcgtcgggcgcgaa
ttcacgctctcggaatggcgcagcattttccaccaattgcatgccctgaacctgatcgaa
caggatgaggaggatcgcgaccgctggtgtttgacgcaaggcgggcgagcggtcttgcgg
ggggaggcggaactgactttgcgcggggaaatggccttgcccaccgggcgcagcgccgat
attcgcaaaagcctgcgcgagatcgaaagcggcgcggaggcagattatgccgatcgtgat
ctcgcccaaaaagcatttacccgagagccgccgcaaatttcttcggccgatctgacgatt
catgaaacgaggctgttcgtcgcgctgaaagcggagcgcttgtctctcgctaaggcgcag
aaacagccgccttatgttatttttcatgatgccgtattggtcgaaatcgctcggcgggcg
ccgcgcgatgaggcccaattgctggaaattcatggtattggtccggccaaggcagcccgt
tacggcgaggccatgcttgctgtcgtcgcccgtcacgaacaagcctga
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