Bengtsoniella intestinalis: RFF05_05945
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Entry
RFF05_05945 CDS
T10691
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
bie Bengtsoniella intestinalis
Brite
KEGG Orthology (KO) [BR:
bie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bie03400
]
RFF05_05945
Enzymes [BR:
bie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RFF05_05945
DNA repair and recombination proteins [BR:
bie03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
RFF05_05945
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
XAY16824
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All DBs
Position
1231864..1235169
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AA seq
1101 aa
AA seq
DB search
MLTILLGLANTGKSSYILERLAHLGDSSAQVLIVPDHTSHLVELDVCHACGDGASRHVQV
LGFHRLCDRVLELSGGAANVTLDAGGKLLLLQKALGEVAPALNVYRKPSQKPAFLEQMLA
VLDELRSYAVTPEQLSQVAEPLQGITRDKLLDLSLLYSAYNAKLHRDGFDARDKMTKLCD
LLEPSGFLTDKDIFLDGFTYFTAQELQAISIMLRQGRSVTITLLGDLSGNAIFDATVKTV
GALERLAKEAGCQCFSEVLETEVTTPLAHLQHHSFGDTATWDEPQTQISVSAATTLYEEV
EQTAAAIRQLVSQGARYRDISIVARNMADYEATIQTVLSRYEIPAYISRRSDILEKPALS
LVTGVLSAIAGGFGYEEMFRYLKTGLSGLSMEQCDVLENYVLRWEIEGQMWLSDAPWTAN
PDGFGAPQNERQEQALAEINALRDLVRTPLAPLVDGLKNGDTAAQKVLVLYQFLQTVGLQ
QALEAQMEQQASVGRLQDAEETAQLWDVLCNVLDQMVETIGDEVSDLDSFASLLRLLLTQ
YSIGTIPVSLDQVSVSEITRNDRHRVPHVFFLGANDSVLPSVGQSGGILNQDDRQALSQQ
GVCLSPSGMEQMGLELLLIYTALAQATQSLTLSYPQLSAGGGQLRPAFIVERILGLFPTL
ITTQDNGTMDYRTVAPIPALEMAGRDPNGSLWQHFKATQNPHLSAMERARTLGRGKLSRK
SVEGLYGKVFRMSASRAERLRGCHFAYFMEYGLRAKPRQIERFDAPQIGSFLHFVLEQLA
QDVAKRGGFAEVEQAEISQLVDGYVDTYAQEVVGDLALKSPRFRYLFGRLRTTVDAVVEQ
VAQELKTSDFVPMAFELGFGGDGDLPAVTLSIDDATLQINGKVDRVDGWVKDDKLYLRVV
DYKSGKKAFDLASVVMGLDIQLLVYLFALQRSGQQHFGQNIVPAGALYFPVRDSIISAKR
SISPADLQKERDKELRRTGMLLRDHAVLKAMEHTALTAPRYLPIKVDKEGNVNGSLASAE
QLGQLGAYVEKILKEVATEVRDGNITADPWAKNENDTFCRYCDWADACHFKEGSGGDCLR
HIPSISPEAFWQEVTGEEVPS
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccatcttactagggcttgccaacactggcaagtcatcttatatcttagaacgt
cttgcccacttgggtgacagctctgcccaagtgctgattgtgcctgaccatacctcccac
ttggtggagctagatgtgtgccacgcctgtggtgatggtgcatctcgccacgtgcaggtg
ttggggttccatcgcttatgcgaccgtgtgctagagctctctggcggtgccgccaacgtc
accttggatgcaggtggtaaactgttgctgttgcaaaaagccttgggcgaagtggcgcca
gcattgaacgtctatcgcaagccttcccaaaagccagcttttttagagcaaatgctggca
gtgttagacgaattgcgttcctatgccgtcaccccagaacagctatcgcaggtggcagag
cctttgcaaggcatcacacgggacaaattactggatttatccttattatatagtgcatac
aatgccaagttgcaccgagatggctttgacgcacgggacaaaatgaccaaactgtgtgac
cttttagaaccctctggttttctgaccgacaaagatatttttctggacggcttcacctat
ttcaccgcccaagaactacaggccatctccatcatgctacgccaagggcggagcgtcacc
atcaccttattgggggatttgtctggcaatgccatcttcgatgccacggtaaaaactgtg
ggcgctttggaacggttggccaaagaagcagggtgccaatgctttagtgaagtgttagag
accgaggtaaccaccccccttgcccacctccaacaccacagttttggggatactgccaca
tgggacgagccgcaaacccaaatttccgtcagcgccgccaccaccttatacgaagaggtg
gagcaaaccgccgccgccatccgacaattggtgtcacaaggggcgcggtatcgcgacatt
tccattgtggcacggaacatggcagactatgaagccaccatccaaaccgtgctttctcgc
tacgaaatcccagcctatatcagccgtcgcagcgacatcttggaaaaacctgctctgtct
ctggtgacaggggtgctcagcgccatcgctggtggctttggctacgaagagatgttccgt
tatttgaaaacaggcctctctggcctttctatggagcagtgcgacgtgctggaaaattac
gtgcttcgctgggaaatcgaagggcaaatgtggctctcagacgccccgtggacagccaac
cccgatggctttggtgcgccccaaaatgagcggcaagaacaggccttggcggaaatcaac
gccctccgcgacttggtgcgcacccctcttgcccccttggtggacggtcttaaaaatggc
gacaccgcggcacaaaaggtgctggtgctgtatcaatttttacaaacagtgggcttacag
caggcgctagaagcccaaatggaacaacaggcctcggtgggtcgcttgcaagatgcagaa
gaaaccgcccagctatgggatgttttatgcaacgtgctagaccaaatggtggaaaccatt
ggggatgaagtttctgacttagacagctttgcttctctcctgcgattgctgttgacccaa
tacagcatcggcaccatccccgtctcccttgaccaagtgtctgtcagcgaaatcacccgc
aacgaccgccaccgtgtaccccatgtgtttttccttggggccaacgactcggttttgccc
agtgttgggcagtcaggggggattttaaaccaagatgaccgccaagcgctgtctcaacaa
ggggtgtgcctatccccctcgggcatggagcaaatgggactagaattgctactgatttac
accgccttggcacaggccacccaaagcctcaccctcagttatccacagcttagcgctggg
ggcggtcaattgcgcccagcttttattgtggaacggattttaggactgttccctaccctt
atcaccacccaagacaacggcaccatggactatcgcaccgtggcacccattccggcatta
gaaatggcagggcgagaccccaacggcagtctatggcaacatttcaaagccactcaaaac
ccccatttgtccgccatggaacgggcgcgcaccttaggccgcggcaaactctctcgcaaa
agcgtggaggggttatatggcaaggtgtttcggatgtctgcctctcgggcagagcggctt
cgtggctgtcattttgcctatttcatggaatacggtctccgcgccaagcctcgacagatc
gagcggtttgacgccccccaaattgggtcattcctccattttgtgttggagcaattggca
caagatgtggccaaacgtggtggctttgctgaggtggaacaggctgaaatcagccaattg
gtagacggctatgttgacacctacgcccaagaagtggtgggggatttggcgctgaaaagc
ccacgcttccgctatctctttggccgcctacgcaccacggtggatgccgtggtagaacag
gtggcgcaggagctgaagacttctgattttgtgcccatggcctttgaattggggtttggc
ggcgatggcgatttgccagcggtcacgttatctattgacgatgccaccttgcaaatcaac
ggcaaagttgaccgtgtagatggttgggtaaaagacgacaagctctatctccgtgtagtg
gactataaatcagggaaaaaggccttcgacttggcttctgtggtgatgggcttagacatt
caacttctggtgtatttatttgccttgcaacgctctggccagcaacactttgggcaaaac
attgtgccagctggtgccctctatttccctgtccgtgacagcattatctcggcaaaacga
agcatctcccctgccgacttacaaaaagaacgagacaaagaactccgccgcacagggatg
ctgctccgtgaccatgcggtgctcaaagccatggaacacaccgctttgaccgccccacgg
tatctgcccatcaaggtggacaaagaaggcaacgtcaatgggagccttgccagcgcagag
caattgggacaattgggcgcctatgtggaaaagattttaaaagaggtggccaccgaagtc
cgtgatggcaacatcaccgccgacccatgggctaaaaacgaaaacgacaccttttgcaga
tattgcgactgggccgatgcctgtcactttaaagagggcagtggaggcgattgtctccgt
cacatcccgtccatcagcccagaggcgttttggcaagaagtcacaggagaggaagtgcca
tcatga
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