Bengtsoniella intestinalis: RFF05_09000
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Entry
RFF05_09000 CDS
T10691
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bie Bengtsoniella intestinalis
Pathway
bie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RFF05_09000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bie03019
]
RFF05_09000
03400 DNA repair and recombination proteins [BR:
bie03400
]
RFF05_09000
Enzymes [BR:
bie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RFF05_09000
Messenger RNA biogenesis [BR:
bie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RFF05_09000
DNA repair and recombination proteins [BR:
bie03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RFF05_09000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_Tnp_4
ANT
HHH
Motif
Other DBs
NCBI-ProteinID:
XAY17406
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All DBs
Position
1867493..1869430
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AA seq
645 aa
AA seq
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MEPLSLLKHHFGYQSFRGGQEALIHSILQGQDALGIMPTGAGKSICYQVPALAMEGIALV
VSPLISLMQDQVVALKQAGVPAAYFNSTLTPKQRDLALYRASLGQYKLIYVAPERLLTPN
FLAFAQSAPITMVAVDEAHCISQWGQDFRPSYGQIPQFIASLPKRPVVCAFTATATQKVT
DDIKQLLDLQQPKVLITGFDRENLYFEVQQPKKKMEALLRFLKQKSDQSGIIYCSTRKAV
EEVCQQLNDQRYYATRYHAGLSDEERRRNQEAFLFDQIPLMVATNAFGMGIDKSNVSFVV
HYNMPKDLESYYQEAGRAGRDGAPAHCLLLYSGQDVRTNQWLIENGRDVEAADPETAQML
INRDKERLKQMTFFATTERCLRNFILRYFGEHPSQDCGHCSTCVLGARQVEAETGWSKRP
TSTKRNYEHSPLNSQEQQLLLCLQRLRKHLADQQGVPPFMIFGDATMQAMCRLKPANKSE
FLEVPGVGDVKLQRYGEAFLLEIKDFVRRTYDGVPPPPPTPVAMGAPKKAKEQLPLPTPA
ILDSLPISQEPTHVSALTMTINGVLKEGGYMGVSSYKIFKWLMSQGYLMEQETPEGKRKV
PTQKGIYAGIVVEERQGADKTYSVNLYPPELQREIIAHLTAIIQG
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggagcccctttccctattgaagcatcactttgggtatcaatccttccgtggtggtcaa
gaagctttgatacactctatcctccaaggccaagatgccttgggcatcatgcccactggg
gctggcaagtccatttgctatcaagtccctgcccttgccatggaggggattgcactggtg
gtatcaccgctgatttccctgatgcaagaccaagtggtggcgctgaaacaagctggcgta
cctgctgcctactttaactccaccctcacccccaagcaacgagacctagccttgtaccgt
gccagcttggggcaatacaagctgatttacgtagcaccagaacgattgttgacacccaat
ttccttgccttcgcccaaagcgcccccatcaccatggtggccgtggacgaagcccactgc
atttcccaatgggggcaagatttccgccccagctatgggcaaatccctcaattcatcgcc
agtttgccaaaaaggcctgtggtctgtgccttcaccgccacggctacacaaaaggtgact
gacgatattaagcaattgttggatttgcaacaacccaaggtgttaatcactggttttgac
cgtgaaaacctatattttgaagtacaacagcccaagaaaaaaatggaggctctgctccga
tttttaaagcaaaaatcagatcaaagcggcatcatctactgctccacacgcaaggcagtg
gaggaagtgtgccaacaactcaacgaccagcgctattacgccacacgctatcacgctggc
ctcagtgacgaggaacggcgacgcaaccaagaggcatttctctttgaccaaatccccttg
atggtggccaccaacgctttcggcatgggcatcgacaagtcaaacgtgtccttcgtggtt
cactacaatatgcccaaagacttagaaagctattaccaagaagctggccgtgctggccga
gacggggcgccagcccactgtctgctgctgtatagcggtcaagatgtgcgcaccaatcag
tggctcatcgaaaacggcagagacgtagaagccgccgaccccgaaaccgcccaaatgctg
ataaaccgcgacaaagaacggctcaagcagatgacctttttcgccaccacggagcgttgc
ttacgcaattttattttgcgatattttggggaacatccctcccaagactgcggtcactgc
agcacctgcgtgctaggggcacgacaggtggaagccgagacaggctggagcaagcgtcct
acctccaccaagcgcaattacgagcattctccgctgaacagccaagagcaacaactattg
ctgtgcttacagcgtttgcgcaagcatctggctgaccaacaaggggtgccaccattcatg
atttttggcgatgccaccatgcaggccatgtgtcggctcaagccagccaacaaatcggag
tttttagaagtgcccggtgtgggcgatgtgaaactacagcgctatggcgaagctttctta
ctggaaatcaaagactttgttcgccgcacctacgatggtgtgccacctccaccccccacc
cctgtggctatgggcgcgcctaaaaaagccaaagaacaactgccactgcccaccccagcc
atactggattccctccccatttcccaagagcccacccatgtgtccgctttgaccatgacc
atcaatggtgtgctcaaagaagggggctatatgggggtcagctcttacaaaattttcaaa
tggctgatgagccaagggtatttgatggaacaagaaaccccagagggcaagcgaaaagtc
cccacccaaaaagggatttacgctggcattgtggtggaagagcgacaaggtgcagacaaa
acctactccgtcaacctctatcccccagagttgcaacgagaaatcatcgcccatttgaca
gccatcatccaaggataa
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