Bengtsoniella intestinalis: RFF05_11100
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Entry
RFF05_11100 CDS
T10691
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bie Bengtsoniella intestinalis
Pathway
bie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RFF05_11100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bie03019
]
RFF05_11100
03016 Transfer RNA biogenesis [BR:
bie03016
]
RFF05_11100
Enzymes [BR:
bie01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RFF05_11100
Messenger RNA biogenesis [BR:
bie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RFF05_11100
Transfer RNA biogenesis [BR:
bie03016
]
Prokaryotic type
tRNA degradation factors
RFF05_11100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
Par3_HAL_N_term
KH_2
SPATA25
KH_N4BP1_2nd
Motif
Other DBs
NCBI-ProteinID:
XAY14360
LinkDB
All DBs
Position
2315207..2317357
Genome browser
AA seq
716 aa
AA seq
DB search
MSTIINQRQYPQHKTFTMDLAGRPLTLEVGKLAELANASVMVGYGDTRVLVCVTASARPR
DGIDFFPLSVDFEEKMYSVGRIPGSFNRREGRPGEKGVLTGRVIDRPLRPLFPYDFRNDV
SIMATVMSTDHDCSPEIAALIGASAALSISDIPFNGPVGALKVGLVEGELVFNPTSEQNK
VSDLDVTVVSTGKKVVMIEAGANEVDNDTMYKAIEMAHNANQTIIALINSMVEEIGKPKF
EYPHAEFNQELFDKIVAATMEDAKAAMDTDDKNVREARWNLLIAKWHELFLAEYPDMDNY
LEEFTYKFQKKIVKAWLLEGHRVDGRQKNEIRALSAEVGVLPRVHGTGLFTRGQTQVLAC
CTLDTLSANQRLDSIWEETEKRYMHHYNFPSYSVGEARGARSPGRREIGHGALAERALLP
VLPSVEDFPYAIRVVSEVVSSNGSTSQGSICGSSLALMDAGVPIKAPVAGISCGLIQDDN
GGFTTFIDIQGVEDFHGEMDFKVGGTKKGITAIQMDLKNDGLTMEIIREALDTTYDARCE
ILDQIMNPCIAEARTEVSQYAPKMLTIHIDPSKIREVIGSGGKVIQKIVADTGAKIDIND
DGTIFISGVDGASCDAAQKCIEDIVFVPKVGTLYYGRVVRLMAFGAFVELAPGKDGLVHI
SKLAERRIEKVEDACKVGDMMWVKVMEIDEKGRVNLSHKDAVREVEAKKAAGEIIK
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaccattattaaccaacgtcaataccctcaacataagaccttcaccatggacttg
gctggtcgtcccctcactctggaagtgggcaagctggctgaattggccaacgcttctgtc
atggtgggctatggcgacacccgtgtgctggtgtgcgtcactgcttctgctcgtcctcgt
gacggcatcgatttcttccccctcagcgtggactttgaagaaaaaatgtactccgtgggt
cgcattcccggttctttcaaccgtcgtgaaggccgtcccggcgaaaaaggtgtgctgact
ggccgtgtcatcgaccgtcctctgcgccccctgttcccctatgatttccgcaacgatgtg
tccatcatggctaccgtcatgagcaccgaccacgattgctctcccgaaatcgccgccctg
attggcgcttctgccgctctgtccatctccgacattcccttcaacggccctgtgggcgca
ttgaaggtgggtctggtggaaggcgaattggtctttaaccccaccagcgaacaaaacaag
gtgtccgacttggacgtcaccgtggtttccactggcaaaaaggttgttatgattgaagct
ggcgccaacgaagtggacaacgacaccatgtataaggccatcgaaatggctcacaatgca
aaccaaaccatcatcgctctgatcaactccatggtggaagaaattggcaagcccaagttc
gaatacccccatgctgagttcaaccaagagctgttcgacaaaatcgtggcagctaccatg
gaagacgctaaggcagccatggacaccgacgacaagaacgtccgtgaagctcgctggaac
ctgctcattgccaaatggcacgaactgttcttggctgaataccccgacatggacaactat
ctggaagaatttacctataagttccaaaagaagattgtcaaggcttggctcttggaaggt
caccgtgttgacggtcgccaaaagaacgaaatccgtgctttgagcgcagaagtgggcgtt
ctgccccgcgtccacggcactggcttgttcacccgtggtcaaacccaagtgttggcttgc
tgtactctggacaccctgagcgcaaaccaacgtctggactccatctgggaagaaaccgaa
aagcgttatatgcaccactacaacttcccctcttactctgtgggtgaagcccgtggcgct
cgtagccccggtcgtcgtgaaattggtcacggtgctctggctgaacgtgctctgttgcct
gtgcttccctctgtggaagacttcccctatgccatccgtgtggtcagcgaagtggtttcc
tctaacggttccacctctcaaggctccatctgcggttcttctctggctctgatggacgct
ggtgtgcccatcaaggcacctgtggctggcatctcctgcggtctgattcaagacgacaac
ggtggcttcaccaccttcatcgacatccaaggcgtggaagatttccacggcgaaatggac
tttaaggttggcggtaccaaaaagggtatcactgccatccaaatggacttgaaaaacgac
ggtttgaccatggaaatcatccgtgaagcactggacaccacctatgatgcccgttgcgaa
attctggatcaaatcatgaacccctgcattgcagaggctcgtaccgaagtgtctcaatac
gctcccaaaatgttgaccatccacattgacccctccaaaatccgtgaagtcatcggttct
ggcggtaaggtcatccaaaaaatcgtggctgacactggggctaaaatcgacatcaacgac
gacggcaccatcttcatctctggtgtggacggcgcatcctgcgatgccgctcaaaagtgc
attgaagacatcgtgttcgtgcccaaggtcggtactttgtactacggccgtgttgtccgc
ttgatggcattcggcgccttcgtggaactggctcccggtaaggacggtctggttcacatt
tctaagctggctgaacgccgcattgaaaaagtggaagacgcttgcaaggttggcgacatg
atgtgggtcaaggtcatggaaatcgacgaaaagggtcgtgtgaacctgtctcacaaagac
gctgttcgtgaagtggaagcaaaaaaagccgctggcgaaatcattaaataa
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