Entry |
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Symbol |
rpoC
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Name |
(GenBank) DNA-directed RNA polymerase subunit beta'
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KO |
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Organism |
bie Bengtsoniella intestinalis
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:bie00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RFF05_11900 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:bie03021]
RFF05_11900 (rpoC)
03400 DNA repair and recombination proteins [BR:bie03400]
RFF05_11900 (rpoC)
Enzymes [BR:bie01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RFF05_11900 (rpoC)
Transcription machinery [BR:bie03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RFF05_11900 (rpoC)
DNA repair and recombination proteins [BR:bie03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RFF05_11900 (rpoC)
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
complement(2495922..2499719)
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AA seq |
1265 aa
MIDSTTGNHIAFDAIKIGMASPEQITSWSYGEVRKPETINYRTLKPERDGLFCEKIFGPT
KDWECHCGKYKKIRYKGKVCDRCGVEVTRSKVRRERMGHIDLATPVSHIWYFKGIPSRMG
LLLDISPRILEKVLYFANYIVTDPGETPLSLNQILSEKEYRDFREKYDDEFHAGMGAEAV
KKLLSDIDLVKLSEQLHTDLKTATGQKKARVVKRLEVVDAFRISGNKPEWMVIDVLPVIS
PELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIQLNAPDIIVRNEKRMLQEAVDAL
IDNGRRGRAVTGANNRALKSLSDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIYQC
GVPKEMAVELFRPFIMKKLVEDGNANNIKSAKKMVDKGETAVWDALDVIIKDHPVMLNRA
PTLHRLGIQAFEPVLVDGRALKLHPLTCTAFNADFDGDQMAIHVPLSAEAQAEARILMLS
ANNLLRPQDGGPVTVPSQDMVLGAYYLTYERIGKAEVGAETVWVTSSGDTGLPVDSVVDA
DEFLAANVAAKADGKQEATFRPVHIYGNENEAMMAYQDKVVGAHCPISVRVSRIIDGVEQ
FKIVHTTPGRIIFNRNLPQDLGFVDRTNPDTMFDYEIAFQCGKKQLGQIVDRTIKKHGFT
VASEVLDAMKSSGYHYSTIAAITVSISDMAIPPKKYELVAESEAKVLEIEEQYKMGFMTD
HERYKQVVAVWEKTTEDVSDALSDNLDRYNPIFMMADSGARGSQKQIRQLAGMRGLIANT
AGKTIEIPIKANYREGLTALEYFISSRGARKGLADTALRTADSGYLTRRMVDVSQDVIIR
AQDCGVQHGIRVSEISENDQVIEKFGDRLRGRFLVSDAVDADTGEVLVSSKEMMTDAETK
ILESRRWVQHNHRAGDACSFDPAQGGKPTIMIRTVLTCRAPSGVCAKCYGMNLATSRPVG
PGEAVGIIAAQSIGEPGTQLTMRTFHTGGLAGGDITQGLPRVEELFEARRPKRMAVLAEI
AGRVQFEETGKSLLNLHIIGADGETHTYAVPHTGLQVRDGVWVEAGTQLTYGALNPHDVL
RIRGADAVFNYLIQEVLRVYRQQGVDINDKHIEVIVRQMMRKVRLESSGDTKLLDGSMVD
ALEMYRCNDEIDRRNAAGERGEDGELLRYAEGAQLLLGITKASLATDSFLSAASFQETTK
VLTEAAIKGKSDRLVGLKENVIIGKLIPAGTGLTAYQNFAKQLVPDQVSEVEVEEVVEDE
LVFEA |
NT seq |
3798 nt +upstreamnt +downstreamnt
atgatcgatagcacaacaggcaatcacattgcctttgatgccattaaaattggcatggcg
tccccagagcagatcacatcttggtcttatggtgaagtcagaaagcctgaaaccatcaac
tatcgtaccttgaaacccgaacgggacggtttgttctgcgaaaaaatcttcgggccaacc
aaggactgggaatgccattgcggcaaatataagaaaattcgttataagggtaaggtctgc
gaccgttgcggcgtagaagtcacccgttctaaggtgcgtcgtgaacgcatgggtcacatt
gacctggccacccccgtttctcatatctggtatttcaaaggcattccctctcgtatgggc
ttgctgctagatatctccccccgtattttggaaaaagtgctgtactttgccaactatatt
gtcaccgatcccggtgaaacccctctcagcttgaaccaaattctctctgagaaggaatac
cgtgatttccgcgaaaaatatgacgacgagttccacgctggcatgggtgcagaagctgtg
aaaaagcttttgtctgacatcgacttggtgaagctgtccgagcaactccacaccgacctg
aaaactgccactggccaaaaaaaggctcgtgtggtcaagcgtttggaagtggtggatgcc
ttccgtatctctggcaacaagcctgagtggatggtcattgacgtgttgcctgtcatctcc
cctgaattgcgccccatggtgcaattggacggtggccgtttcgcaacatctgacttgaac
gacttgtatcgtcgtgtcatcaaccgtaacaaccgtttgaagcgtttgattcaactcaac
gcacctgacatcatcgtccgcaacgaaaagcgtatgcttcaagaagcggtggatgctctg
attgacaacggtcgtcgtggtcgcgccgtcactggcgccaacaaccgtgctttgaaatcc
ttatccgatttgctcaagggtaagcaaggtcgtttccgtcaaaacttgctgggtaaacgt
gtcgactattctggccgttccgttatcgtggttggccctgaattgaagatttatcaatgc
ggtgtgcccaaggaaatggctgtggaactgttccgtcccttcatcatgaaaaaattggtg
gaagacggtaatgccaacaacatcaagtccgccaaaaagatggtggacaagggtgaaacc
gctgtgtgggatgctctggatgtcatcatcaaagaccaccccgtcatgctcaaccgcgca
ccaacccttcaccgtttgggtatccaagcctttgaacctgtgttggttgacggtcgcgca
ctgaagcttcaccccttgacctgtactgcatttaacgccgacttcgacggtgaccaaatg
gctatccacgtacctttgagcgctgaagcccaagcagaagctcgtattttgatgctgtct
gctaacaacctgcttcgtcctcaagatggtggccctgtgaccgtgccttctcaagatatg
gtgctgggtgcttactacctgacctacgaacgcatcggcaaagccgaagtgggcgcagaa
actgtgtgggtcaccagctctggtgacactggtttgcctgtagattctgtggttgacgct
gacgaattcttggccgccaatgttgccgccaaggcagacggcaagcaagaagccaccttc
cgccctgtccacatctatggcaacgaaaacgaagccatgatggcctatcaagacaaggtt
gtgggtgctcactgccccatttctgtccgcgtgtcccgtatcattgacggcgtggaacaa
ttcaaaattgtccacaccacccctggccgcatcattttcaaccgcaacctgccccaagac
ttgggctttgtggatcgtaccaaccccgacaccatgttcgactacgaaattgccttccaa
tgcggtaaaaagcaactggggcaaatcgttgaccgcaccatcaaaaagcacggcttcacc
gtggcttctgaagtgctagacgccatgaagtccagtggttaccactattccaccatcgcc
gccatcaccgtgtccatttctgacatggccattcctcccaaaaagtatgaattggtggca
gaatccgaagccaaggttttggaaattgaagaacaatacaaaatgggcttcatgaccgac
cacgaacgctacaagcaagtggttgctgtctgggaaaagaccaccgaagacgtttctgat
gctctgagcgacaacctcgaccgctacaaccccatcttcatgatggctgactctggcgcc
cgtggttctcaaaagcaaatccgtcaattggctggtatgcgtggtttgattgcaaacacc
gctggtaaaaccatcgaaatccccatcaaggccaactaccgtgaaggtttgaccgcattg
gaatacttcatctcctctcgtggtgctcgtaagggcttggcggataccgctctgcgtacc
gctgactccggttacttgacccgtcgtatggttgacgtttctcaagacgtgatcatccgc
gcccaagattgtggcgtgcaacacggtatccgtgtcagcgaaatttccgaaaatgaccaa
gtcatcgaaaagttcggtgaccgtctccgcggtcgcttcttagtcagcgacgctgtggat
gcagatactggcgaagtgctggtctctagcaaggaaatgatgaccgatgcggaaaccaaa
attttggaatcccgtcgttgggtgcaacacaaccaccgcgctggcgatgcctgcagcttt
gaccctgctcaaggtggcaagcctaccatcatgattcgcaccgttttgacctgccgtgca
ccaagtggtgtgtgtgcaaagtgctacggtatgaacttggctacttcccgccctgtgggc
cctggcgaagccgtcggtatcatcgccgcacaatccatcggcgaacctggtacccagctg
accatgcgtaccttccataccggcggtttggctggtggcgatatcacccaaggtttgcct
cgtgttgaagaactgttcgaagcccgtcgccccaagcgtatggctgtgctggctgaaatt
gctggtcgtgttcaattcgaagaaaccggcaagagcctcttaaacctccacatcatcggc
gcagacggggaaacccacacctatgccgtgcctcacactgggctgcaagtccgtgatggc
gtgtgggtggaagctggcacccagctgacctatggtgcattgaacccccatgacgtgctc
cgcatccgcggcgctgacgctgtgtttaactacttgattcaagaagttttgcgcgtgtac
cgtcaacaaggcgtagacatcaacgataagcatatcgaagtcattgtccgtcaaatgatg
cgtaaagtccgtttggaaagctctggcgacaccaaacttctggacggctccatggttgat
gctctggaaatgtaccgctgcaacgatgaaatcgaccgtcgtaacgccgctggcgaacgc
ggtgaagatggtgaacttctgcgctacgcagaaggcgcccagctgctgttgggtatcacc
aaggcctctctggcaactgactccttcttgtctgcggcgtccttccaagaaaccaccaag
gtgctcactgaagctgccatcaagggcaagagcgaccgtttggttggcctgaaagaaaac
gtcatcatcggcaagctgattcctgctggtactggtctcaccgcctaccaaaattttgca
aagcaactggtccccgaccaagtgagcgaagtggaagtagaagaagtggtggaagacgaa
ctggtatttgaagcctaa |