KEGG   Bengtsoniella intestinalis: RFF05_11900
Entry
RFF05_11900       CDS       T10691                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
bie  Bengtsoniella intestinalis
Pathway
bie03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bie00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RFF05_11900 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bie03021]
    RFF05_11900 (rpoC)
   03400 DNA repair and recombination proteins [BR:bie03400]
    RFF05_11900 (rpoC)
Enzymes [BR:bie01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RFF05_11900 (rpoC)
Transcription machinery [BR:bie03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RFF05_11900 (rpoC)
DNA repair and recombination proteins [BR:bie03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RFF05_11900 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 ApbA_C
Other DBs
NCBI-ProteinID: XAY14508
LinkDB
Position
complement(2495922..2499719)
AA seq 1265 aa
MIDSTTGNHIAFDAIKIGMASPEQITSWSYGEVRKPETINYRTLKPERDGLFCEKIFGPT
KDWECHCGKYKKIRYKGKVCDRCGVEVTRSKVRRERMGHIDLATPVSHIWYFKGIPSRMG
LLLDISPRILEKVLYFANYIVTDPGETPLSLNQILSEKEYRDFREKYDDEFHAGMGAEAV
KKLLSDIDLVKLSEQLHTDLKTATGQKKARVVKRLEVVDAFRISGNKPEWMVIDVLPVIS
PELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIQLNAPDIIVRNEKRMLQEAVDAL
IDNGRRGRAVTGANNRALKSLSDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIYQC
GVPKEMAVELFRPFIMKKLVEDGNANNIKSAKKMVDKGETAVWDALDVIIKDHPVMLNRA
PTLHRLGIQAFEPVLVDGRALKLHPLTCTAFNADFDGDQMAIHVPLSAEAQAEARILMLS
ANNLLRPQDGGPVTVPSQDMVLGAYYLTYERIGKAEVGAETVWVTSSGDTGLPVDSVVDA
DEFLAANVAAKADGKQEATFRPVHIYGNENEAMMAYQDKVVGAHCPISVRVSRIIDGVEQ
FKIVHTTPGRIIFNRNLPQDLGFVDRTNPDTMFDYEIAFQCGKKQLGQIVDRTIKKHGFT
VASEVLDAMKSSGYHYSTIAAITVSISDMAIPPKKYELVAESEAKVLEIEEQYKMGFMTD
HERYKQVVAVWEKTTEDVSDALSDNLDRYNPIFMMADSGARGSQKQIRQLAGMRGLIANT
AGKTIEIPIKANYREGLTALEYFISSRGARKGLADTALRTADSGYLTRRMVDVSQDVIIR
AQDCGVQHGIRVSEISENDQVIEKFGDRLRGRFLVSDAVDADTGEVLVSSKEMMTDAETK
ILESRRWVQHNHRAGDACSFDPAQGGKPTIMIRTVLTCRAPSGVCAKCYGMNLATSRPVG
PGEAVGIIAAQSIGEPGTQLTMRTFHTGGLAGGDITQGLPRVEELFEARRPKRMAVLAEI
AGRVQFEETGKSLLNLHIIGADGETHTYAVPHTGLQVRDGVWVEAGTQLTYGALNPHDVL
RIRGADAVFNYLIQEVLRVYRQQGVDINDKHIEVIVRQMMRKVRLESSGDTKLLDGSMVD
ALEMYRCNDEIDRRNAAGERGEDGELLRYAEGAQLLLGITKASLATDSFLSAASFQETTK
VLTEAAIKGKSDRLVGLKENVIIGKLIPAGTGLTAYQNFAKQLVPDQVSEVEVEEVVEDE
LVFEA
NT seq 3798 nt   +upstreamnt  +downstreamnt
atgatcgatagcacaacaggcaatcacattgcctttgatgccattaaaattggcatggcg
tccccagagcagatcacatcttggtcttatggtgaagtcagaaagcctgaaaccatcaac
tatcgtaccttgaaacccgaacgggacggtttgttctgcgaaaaaatcttcgggccaacc
aaggactgggaatgccattgcggcaaatataagaaaattcgttataagggtaaggtctgc
gaccgttgcggcgtagaagtcacccgttctaaggtgcgtcgtgaacgcatgggtcacatt
gacctggccacccccgtttctcatatctggtatttcaaaggcattccctctcgtatgggc
ttgctgctagatatctccccccgtattttggaaaaagtgctgtactttgccaactatatt
gtcaccgatcccggtgaaacccctctcagcttgaaccaaattctctctgagaaggaatac
cgtgatttccgcgaaaaatatgacgacgagttccacgctggcatgggtgcagaagctgtg
aaaaagcttttgtctgacatcgacttggtgaagctgtccgagcaactccacaccgacctg
aaaactgccactggccaaaaaaaggctcgtgtggtcaagcgtttggaagtggtggatgcc
ttccgtatctctggcaacaagcctgagtggatggtcattgacgtgttgcctgtcatctcc
cctgaattgcgccccatggtgcaattggacggtggccgtttcgcaacatctgacttgaac
gacttgtatcgtcgtgtcatcaaccgtaacaaccgtttgaagcgtttgattcaactcaac
gcacctgacatcatcgtccgcaacgaaaagcgtatgcttcaagaagcggtggatgctctg
attgacaacggtcgtcgtggtcgcgccgtcactggcgccaacaaccgtgctttgaaatcc
ttatccgatttgctcaagggtaagcaaggtcgtttccgtcaaaacttgctgggtaaacgt
gtcgactattctggccgttccgttatcgtggttggccctgaattgaagatttatcaatgc
ggtgtgcccaaggaaatggctgtggaactgttccgtcccttcatcatgaaaaaattggtg
gaagacggtaatgccaacaacatcaagtccgccaaaaagatggtggacaagggtgaaacc
gctgtgtgggatgctctggatgtcatcatcaaagaccaccccgtcatgctcaaccgcgca
ccaacccttcaccgtttgggtatccaagcctttgaacctgtgttggttgacggtcgcgca
ctgaagcttcaccccttgacctgtactgcatttaacgccgacttcgacggtgaccaaatg
gctatccacgtacctttgagcgctgaagcccaagcagaagctcgtattttgatgctgtct
gctaacaacctgcttcgtcctcaagatggtggccctgtgaccgtgccttctcaagatatg
gtgctgggtgcttactacctgacctacgaacgcatcggcaaagccgaagtgggcgcagaa
actgtgtgggtcaccagctctggtgacactggtttgcctgtagattctgtggttgacgct
gacgaattcttggccgccaatgttgccgccaaggcagacggcaagcaagaagccaccttc
cgccctgtccacatctatggcaacgaaaacgaagccatgatggcctatcaagacaaggtt
gtgggtgctcactgccccatttctgtccgcgtgtcccgtatcattgacggcgtggaacaa
ttcaaaattgtccacaccacccctggccgcatcattttcaaccgcaacctgccccaagac
ttgggctttgtggatcgtaccaaccccgacaccatgttcgactacgaaattgccttccaa
tgcggtaaaaagcaactggggcaaatcgttgaccgcaccatcaaaaagcacggcttcacc
gtggcttctgaagtgctagacgccatgaagtccagtggttaccactattccaccatcgcc
gccatcaccgtgtccatttctgacatggccattcctcccaaaaagtatgaattggtggca
gaatccgaagccaaggttttggaaattgaagaacaatacaaaatgggcttcatgaccgac
cacgaacgctacaagcaagtggttgctgtctgggaaaagaccaccgaagacgtttctgat
gctctgagcgacaacctcgaccgctacaaccccatcttcatgatggctgactctggcgcc
cgtggttctcaaaagcaaatccgtcaattggctggtatgcgtggtttgattgcaaacacc
gctggtaaaaccatcgaaatccccatcaaggccaactaccgtgaaggtttgaccgcattg
gaatacttcatctcctctcgtggtgctcgtaagggcttggcggataccgctctgcgtacc
gctgactccggttacttgacccgtcgtatggttgacgtttctcaagacgtgatcatccgc
gcccaagattgtggcgtgcaacacggtatccgtgtcagcgaaatttccgaaaatgaccaa
gtcatcgaaaagttcggtgaccgtctccgcggtcgcttcttagtcagcgacgctgtggat
gcagatactggcgaagtgctggtctctagcaaggaaatgatgaccgatgcggaaaccaaa
attttggaatcccgtcgttgggtgcaacacaaccaccgcgctggcgatgcctgcagcttt
gaccctgctcaaggtggcaagcctaccatcatgattcgcaccgttttgacctgccgtgca
ccaagtggtgtgtgtgcaaagtgctacggtatgaacttggctacttcccgccctgtgggc
cctggcgaagccgtcggtatcatcgccgcacaatccatcggcgaacctggtacccagctg
accatgcgtaccttccataccggcggtttggctggtggcgatatcacccaaggtttgcct
cgtgttgaagaactgttcgaagcccgtcgccccaagcgtatggctgtgctggctgaaatt
gctggtcgtgttcaattcgaagaaaccggcaagagcctcttaaacctccacatcatcggc
gcagacggggaaacccacacctatgccgtgcctcacactgggctgcaagtccgtgatggc
gtgtgggtggaagctggcacccagctgacctatggtgcattgaacccccatgacgtgctc
cgcatccgcggcgctgacgctgtgtttaactacttgattcaagaagttttgcgcgtgtac
cgtcaacaaggcgtagacatcaacgataagcatatcgaagtcattgtccgtcaaatgatg
cgtaaagtccgtttggaaagctctggcgacaccaaacttctggacggctccatggttgat
gctctggaaatgtaccgctgcaacgatgaaatcgaccgtcgtaacgccgctggcgaacgc
ggtgaagatggtgaacttctgcgctacgcagaaggcgcccagctgctgttgggtatcacc
aaggcctctctggcaactgactccttcttgtctgcggcgtccttccaagaaaccaccaag
gtgctcactgaagctgccatcaagggcaagagcgaccgtttggttggcctgaaagaaaac
gtcatcatcggcaagctgattcctgctggtactggtctcaccgcctaccaaaattttgca
aagcaactggtccccgaccaagtgagcgaagtggaagtagaagaagtggtggaagacgaa
ctggtatttgaagcctaa

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