Bengtsoniella intestinalis: RFF05_12625
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Entry
RFF05_12625 CDS
T10691
Name
(GenBank) AAA family ATPase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
bie Bengtsoniella intestinalis
Pathway
bie03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RFF05_12625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bie03400
]
RFF05_12625
Enzymes [BR:
bie01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RFF05_12625
DNA repair and recombination proteins [BR:
bie03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RFF05_12625
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_30
AAA_19
UvrD_C_2
Viral_helicase1
AAA_11
SH3_13
AAA_22
PhoH
ATP_bind_1
Herpes_Helicase
ABC_tran
TraI_hel_assoc_N
AAA_16
AAA_29
NACHT
RsgA_GTPase
nSTAND_NTPase5
AAA_23
PIF1
AAA_5
NPHP3_N
AAA
SMC_N
nSTAND3
P-loop_TraG
T2SSE
NTPase_1
AAA_25
Rad17
AAA_21
AAA_12
IstB_IS21
nSTAND1
UvrD_C
ORC-CDC6-like
NB-ARC
AAA_33
AAA_28
UvrD-helicase
cobW
Ploopntkinase3
DUF815
Motif
Other DBs
NCBI-ProteinID:
XAY14635
LinkDB
All DBs
Position
complement(2648523..2650061)
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AA seq
512 aa
AA seq
DB search
MYNRDNITLKLHREARGKYIGKAMDDIALGGDTYTFEDALLQQCLQEHPYLHPVEFREDL
RWMLQQGFLQIEGRRLYKNRLLICENTVAERLATILPDNTLPQTDLPTTLAVGDTILTDE
QRAGVVLALSHRLSILLGPAGSGKSTLIQAISQQCTEKGRQVLCAPTGKAARNLRDRTGC
YASTIHGAVGIRPDEADVPVVWNHVPLVVIDEASMMTLEMLLWILERAPSFCRVVLVGDP
HQLPSVGAGNVLSDLLTLGFPSVTLETIHRQEGGATALRTNIKRFHQLTHVDQLEEDDSF
QFIQASRHEISAKLCTQAVVAYQNGASTQVLSPYNKAGALSAVALNAAIAPQVNPPLNKA
SVTLYQHPQLCDGDRVIITKNSRAQDCCNGDVGVLHLDDMMGLYPIFSIHLPDGRTPTWR
HTGHLRHVLPAYALTVHKSQGSEYDTILFPVSPSASSMLTRNLLYTAISRAKKKVILIGD
RDALHAAMQKAPPARNSKLVAKTRMLLHRPSA
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgtataatagagataacattacgctaaagctacaccgtgaagccagaggaaaatacatc
ggcaaagccatggatgacattgcactgggtggcgacacctatacatttgaagatgcgttg
ctgcaacaatgcctacaagaacacccatatctgcatccagtggaattccgagaggatttg
cggtggatgctccaacagggatttttacagatagaagggagacgcttatataaaaaccgc
cttctcatttgcgaaaacactgtggcagagcgattggcaaccattttaccagacaacacc
cttccacagaccgatttgcccaccacccttgcagttggcgacaccatcctcaccgacgaa
caacgtgcaggcgttgtgctggcactttcccatcgcctttccattttattaggccctgct
ggctcagggaaaagcacattgattcaagccatttcccaacaatgcaccgaaaagggacgc
caagtgttatgcgccccaacaggcaaggccgcccgtaacttgcgtgaccgcactggatgc
tatgccagcacgattcatggcgcagtgggaattcgccctgacgaagcagacgtgcctgtg
gtatggaatcatgttcccttggtggtgattgacgaggccagcatgatgaccttggaaatg
ctcctctggattttagaacgagccccttccttttgtcgtgtggttctggtcggggatccc
caccaactgcccagtgttggcgctggcaacgtactctctgacctgttaaccttggggttc
ccctctgtcaccctagaaaccattcatcgccaagagggcggtgcaacggcgctacgcacc
aacatcaaacgcttccaccagctgacccacgttgaccagttggaagaagacgatagtttt
caattcattcaagcatctaggcatgaaatctctgcaaagctatgcacccaagccgtggtg
gcctatcaaaatggcgcctccacccaagtgttgtctccctacaacaaagcaggggctctg
tctgcggtggctctcaatgccgccattgcgccccaagtcaatcctcccttgaacaaagct
tccgttaccttataccaacacccacaactgtgtgacggtgatcgagttatcatcaccaaa
aacagccgtgcccaagactgctgtaacggggatgtaggtgttttgcatttagatgatatg
atgggtctctaccctatcttttccatccaccttcccgatggacgtacacccacctggcgt
catacagggcacctgcgccatgtactcccagcctacgcactgaccgtccacaagtctcaa
gggagcgaatacgataccattcttttccctgtgtcacctagcgcttctagcatgctaaca
cgcaacttgctctatactgccatttcaagagccaagaaaaaagtcattctcattggagat
cgagacgctttgcatgcggccatgcaaaaagcccctcctgccagaaactccaaactagta
gccaagacacggatgcttcttcatagaccatcagcataa
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