Bengtsoniella intestinalis: RFF05_16575
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Entry
RFF05_16575 CDS
T10691
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bie Bengtsoniella intestinalis
Pathway
bie03030
DNA replication
bie03430
Mismatch repair
bie03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RFF05_16575
03430 Mismatch repair
RFF05_16575
03440 Homologous recombination
RFF05_16575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bie03032
]
RFF05_16575
03400 DNA repair and recombination proteins [BR:
bie03400
]
RFF05_16575
Enzymes [BR:
bie01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RFF05_16575
DNA replication proteins [BR:
bie03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RFF05_16575
DNA repair and recombination proteins [BR:
bie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RFF05_16575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
XAY15377
LinkDB
All DBs
Position
3484293..3487763
Genome browser
AA seq
1156 aa
AA seq
DB search
MPFTHLHVHTEFSLLDGACRIRDLPKVVKEMGQTACAITDHGVMYGCVDFYRACKAEGIK
PIIGCEVYVAAQGRKHTDKVHEYDKSSRHLVLLCENEDGYQNLSYLVSKGWTDGFYVRPR
IDQDLLKEHHKGLIALSACLAGEIPKQLMQGQYEAAKAYALEMAELFGEDRFYLELQDHG
IKEQVAVNQEIVRLHEETGIPLVCTNDAHYLRKEDAEAHDVLLCIQTGKLLDDENRMRYE
PRNFYLRSEQEMQTLFAAYPEAIENTQKITDLCNLEFTFGKYHLPEFPLPEGYDAFGYMK
ELCMEGYRERYGDDDAHLPQLKYEQDMIEQMGFTDYFLIVSDFVRYARSVNIPVGPGRGS
AAGSMVSYCLGITDIDPAAYNLYFERFLNPERVSMPDIDMDFGDTRRGEVVEYVRQKYGN
NRVAQIITFGTMAARGVLRDVGRVMNMPYAQVDTIAKLVPNALHITLKEALKLSKPVADL
YNADPQVKALIDMAQSLEGMPRNASTHAAGVVITKRPVYEYVPLAKNDESLVCQYVMTTL
EELGLLKMDFLGLRNLTVLEDAIQMVRRDRPDFSMADVSETDTETFEMIGSGRTSGVFQM
ESTGMTGVCVGLKPQNIEDLTAIIALYRPGPMESIPRFISCKHNPKNIVYLHETLEPILS
ITYGCIVYQEQVIEIFRRLAGYSLGQADMVRRAISKKKAKEIEKEKQAFILGDPERNIAG
CVNHGIPQAIAEKIYQEIYDFANYAFNKAHAVSYAVVAYQTAWFKCHYPAEYMAALLSSV
LDNSDKVSMYINECKECNIPLYPPDINRSCDCFTVEDGGIRFGLVAIKNIGRGFILRMMD
EREKSGDFTSLQDFCQRMTGLDMNKRAVENLIRAGAFASLGAKRSQLLAVFESVMDGEGV
RKKQNLDGQIDFFAMAMGDGPAPPPAAVSLPNIPEFSAKELMTMEKETMGLYISGHPMDD
YREQVRQMGLPTIGAVLEDFAQEGGSTRFQDGQYVKLAGVVTSSKTKTTKNQSLMAYVVL
EDATGSMETLCFSRTLEASGSYLQENQSILMEGKLSVRDEKAPQMLCNRVTPLEHLPAVK
PAEAGAPKRLYLKCPSWEDSQTEQVRRTLQMFPGNVPVTLLMADTRKQMGTSCQIQDELL
QELSNILGQENVVLKR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccatttacccatctacacgtccataccgagtttagcttgctagacggcgcttgccgc
atccgtgacctgccaaaggtggtcaaagagatggggcaaacggcttgcgccatcaccgac
catggggtcatgtacgggtgcgtggatttttaccgcgcttgcaaggctgagggcatcaag
cccatcatcggctgtgaggtgtatgtggcggcgcaagggcgcaagcacacagacaaagtc
catgaatacgacaaatccagccgtcatttggtactactctgcgaaaatgaggatgggtat
caaaacctgtcctacttggtgtctaagggttggacagatgggttttatgtccgtcctcgc
attgaccaagacctgcttaaagagcaccataaggggctgattgcgctatcggcctgtctg
gctggggaaattcccaagcagctgatgcaaggccagtacgaggccgccaaagcctatgcg
ctggaaatggcagagctgtttggggaagaccgattttacctagaactccaagaccacggc
atcaaagaacaggtggcagtgaaccaagaaattgtccgcttgcatgaggaaacaggtatt
cctttggtgtgcaccaacgatgcgcattacctccgcaaagaagatgcagaggctcatgat
gtgttgctgtgcatccagactgggaaactactagacgatgaaaatcgtatgcgctatgag
ccacggaatttctatttgcgctctgagcaagaaatgcaaacattatttgccgcctatcca
gaggctattgaaaacactcaaaaaattacggatttgtgtaatttggagtttacttttggc
aagtatcacttgccagagtttccgttgccagaagggtacgacgcctttggttacatgaaa
gagctgtgcatggaggggtatcgtgagcgttatggcgacgacgatgcccacctgccacaa
ctgaaatacgagcaggatatgattgagcaaatggggtttaccgactatttcctcattgtc
tccgacttcgtccgctatgctcgtagtgtcaacattcccgttggccctggccgtggctct
gcagcaggttccatggtgtcctattgtctgggcatcaccgacattgaccctgcagcctat
aacctgtattttgaacggtttttaaaccctgagcgtgtgtccatgcccgatatcgatatg
gatttcggagacacacgccgtggggaagtggtggaatatgtccgccaaaaatacggcaac
aaccgtgttgcccagatcatcacctttggtaccatggcggcacggggcgtgctccgtgac
gtgggtcgggtgatgaatatgccctatgcccaagtggataccatcgccaaactggtgcca
aatgccctgcacattaccttgaaagaagccttgaaactgagcaagcctgtggcggattta
tacaacgctgacccccaagtgaaagctttgattgacatggcgcaatctctggaagggatg
cctcgcaatgcctctacccatgccgcaggtgtggtgattaccaagcgtcctgtgtacgaa
tatgtacccttggcgaaaaatgatgaatccttggtctgccaatatgtgatgactacattg
gaagaattgggcttgctgaaaatggactttttggggcttcgaaatttgacggttttggaa
gatgccattcaaatggtgcggcgagaccgtccagacttctccatggctgatgtgagtgaa
accgatacggaaacctttgaaatgattggcagtggacgtacctcaggtgtgttccaaatg
gaatccactggtatgacaggggtttgcgtgggcttaaaaccccaaaatattgaagattta
acggctattatcgccctctatcgccccggccctatggaaagtattccgcggtttatctcc
tgcaagcacaatcccaagaatattgtctatctgcacgagacattggagccgattttgtcc
attacctatggatgtattgtgtaccaagaacaggtgattgaaatttttcgccgtttggct
ggctattcactgggacaggcagacatggtgcgccgtgccatctccaagaaaaaggccaag
gaaatcgaaaaggaaaagcaggcctttatcttgggtgacccagagcgcaacattgcaggt
tgtgtgaaccacggcattccacaggccattgcggagaagatttaccaagagatttacgac
tttgccaactacgcctttaacaaggcccacgctgtgagctatgcggtggtggcctatcaa
acggcgtggttcaagtgtcattatcctgcggaatacatggcggcactcctctctagcgtg
ctagacaactcagacaaggtttctatgtacatcaacgagtgcaaagagtgcaatattcca
ctgtatcccccggatatcaaccgttcttgcgactgtttcaccgtggaagacgggggcatt
cgctttgggttggtggccattaaaaatatcggtcggggatttattctgcggatgatggat
gagcgagaaaaaagcggtgatttcacatcacttcaagatttctgccaacggatgacaggc
ttggatatgaacaagcgtgctgtggaaaatctgatccgtgctggtgcctttgccagcctt
ggtgccaagcggtcacagcttttggctgtgttcgagtcggtgatggatggagaaggggtg
cggaaaaagcagaatttagatgggcaaatagacttttttgccatggccatgggggacggt
cctgccccaccacctgcggcggtgtctctgcccaacatcccagagtttagtgccaaagaa
ctgatgaccatggaaaaagaaaccatggggctgtatatttcagggcaccctatggacgat
tatcgggaacaagtgcgccaaatggggttacccaccatcggtgcggtgttagaagatttc
gcgcaagaaggtgggtctacacgattccaagatgggcaatatgtcaagttggcaggggtg
gtcacctctagcaaaaccaaaaccaccaaaaaccaaagcttgatggcctatgtggtgcta
gaagatgcaacaggatcgatggaaactttgtgtttttctcggacgctagaggccagtggc
agttatttgcaggaaaatcaaagcatattgatggaaggaaagctgtcagtgcgagatgaa
aaagccccccaaatgctgtgcaatcgggtcacgccccttgagcatttgccagcagtgaaa
ccagcggaggcaggggcgcccaaacggctctatttgaaatgccccagctgggaagacagc
caaacagagcaagtccgtagaacgctgcaaatgttccctgggaatgtgcctgtgacctta
ctgatggcagacacccgcaagcagatgggcaccagttgtcaaatccaagatgagttgcta
caagaattgagcaacattttgggacaagaaaatgtggtgttgaaacggtaa
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