Bengtsoniella intestinalis: RFF05_16955
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Entry
RFF05_16955 CDS
T10691
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bie Bengtsoniella intestinalis
Pathway
bie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RFF05_16955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bie03019
]
RFF05_16955
03009 Ribosome biogenesis [BR:
bie03009
]
RFF05_16955
Enzymes [BR:
bie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RFF05_16955
Messenger RNA biogenesis [BR:
bie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RFF05_16955
Ribosome biogenesis [BR:
bie03009
]
Prokaryotic type
rRNA helicases
RFF05_16955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XAY15450
LinkDB
All DBs
Position
complement(3566917..3568662)
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AA seq
581 aa
AA seq
DB search
MTKTTFSELDLQPQVLQAIEELGFVEATAVQAQSIPVIRTGVDVLAQSQTGTGKTMAFAI
PAVESIDPENKHVQVLVLSPTRELSQQCGQEIRKIAKHLSYIKTADIFGGADYVTQFRAL
KDANLVIGTPGRIMDHMKRNSLDLSHLKMIVLDEADEMLNMGFKEDIETILQDVPESRQI
VLFSATIPSGILAITKQFQRDPVHITTQAAATMLENIEQRVVDVPMHQKPQAMKLLMHYC
KPTRAIVFANTKAMVDELTELLGSTGFYTQGLHGDMKQLQRTSVMNGFKTGKVQVLVATD
VAARGIDVSGVDYVFNFDIPKVSEYYVHRIGRTGRAGRSGTAITLCSGRQQLLQLQRLSN
QIKSTILPMDLPTIAQIQERNAERDLEDLRLQLNETIPDAHLKMMATLVEEGHNPSHIAA
ALVGMAFQHKLHGLEDVKMPKRVKLNLDRKEKSFEDRKPRLSKDGKEGKVEKHGFKPYCG
ELVLSIGRASRVKPNHIVGAITEASGISSKEIGQIDISDDCSVVKIPMEALDHVLHSMRG
VKICGKPVTATALVEPKRKRLEKKPFHKKKDAKPFKKKFKD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaaaccaccttttccgaattagacctacagccccaagttctgcaagccatcgag
gaactgggcttcgtggaagccactgctgtccaagcccaatccatccccgtcatccgcact
ggcgttgacgtgctggcacaatcccaaactggtactggcaaaaccatggccttcgccatc
cctgccgtggagtccatcgaccctgaaaacaagcacgtgcaagtgctggtgctgtctccc
acccgtgagctgagccaacaatgcggtcaagaaatccgcaaaattgccaagcatttatct
tatatcaaaactgccgacatctttggcggtgctgattatgtgacccaattccgtgccttg
aaagatgccaacttggtcatcggcacccccggtcgtatcatggaccacatgaagcgtaac
agcttggatttgagccatctgaaaatgattgtgctagacgaagctgacgaaatgctgaac
atgggctttaaagaagatatcgaaaccattttgcaagatgtgcccgaaagccgccaaatc
gtgctgttttctgccaccatccccagtgggattttggccatcaccaaacaattccaacgt
gaccccgtccacatcaccacccaagccgccgccaccatgctagagaacatcgagcaacgt
gtggtagacgtgcccatgcaccaaaagccccaagccatgaagcttttgatgcactattgc
aagcccacccgcgccatcgtcttcgccaacaccaaggccatggtggacgagctgaccgaa
ctgctaggctccactgggttctacacccaaggcttgcatggcgacatgaagcaactccaa
cgcaccagcgtgatgaacggctttaaaactggcaaggtgcaagtgctggttgccaccgat
gtggcggctcgtggcatcgacgtctctggcgtggactatgtctttaacttcgacattccc
aaggtcagcgaatattacgtccaccgcatcggccgtactggtcgtgctggtcgttctggc
accgccatcaccttgtgcagtggtcgccaacagctgttgcagttgcaacgcttatccaac
caaatcaagtccaccatcctccccatggacttacccaccattgcccaaatccaagagaga
aacgctgagcgtgacctagaagatttgcgtttgcaattgaacgaaaccatccctgacgca
cacctgaaaatgatggcaaccttggtggaagagggtcacaaccccagccacattgccgct
gctttggtgggtatggccttccaacacaaactccatggtttggaagacgtgaaaatgcct
aaacgtgtgaagctgaaccttgaccgcaaagaaaagtcttttgaagatcgcaagcccaga
ctgtccaaagacggcaaagaaggcaaagtggaaaagcacggatttaagccctattgtggg
gaactggtgctgtccatcggtcgcgccagccgtgtgaaacccaaccacattgtgggtgcc
atcaccgaagcgtctggcatttcctccaaggaaattggtcaaatcgacatcagcgatgat
tgctccgtggtgaaaatccccatggaagcccttgaccatgtgctccactccatgcgtggt
gtgaaaatctgtggcaagcctgtcaccgccaccgctttggtagaacccaagcgcaagcgt
ttggaaaagaaacccttccacaagaaaaaggacgcaaagccctttaagaaaaagttcaaa
gattga
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