Bengtsoniella intestinalis: RFF05_17240
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Entry
RFF05_17240 CDS
T10691
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
bie Bengtsoniella intestinalis
Pathway
bie03030
DNA replication
bie03410
Base excision repair
bie03420
Nucleotide excision repair
bie03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RFF05_17240 (polA)
03410 Base excision repair
RFF05_17240 (polA)
03420 Nucleotide excision repair
RFF05_17240 (polA)
03440 Homologous recombination
RFF05_17240 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bie03032
]
RFF05_17240 (polA)
03400 DNA repair and recombination proteins [BR:
bie03400
]
RFF05_17240 (polA)
Enzymes [BR:
bie01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RFF05_17240 (polA)
DNA replication proteins [BR:
bie03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RFF05_17240 (polA)
DNA repair and recombination proteins [BR:
bie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
RFF05_17240 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RFF05_17240 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
HHH_5
DNA_polI_exo1
HHH_2
Motif
Other DBs
NCBI-ProteinID:
XAY15503
LinkDB
All DBs
Position
3628523..3631171
Genome browser
AA seq
882 aa
AA seq
DB search
MKLMVIDGNSIVNRAYYGIRTLTNQEGLHTNAIYGFLTTLQRLLDEEKPEAVCVTFDVHA
PTFRHEADSAYKATRKGMDEELRQQMPVLKQVLDAMQIPRYEMAGWEADDLIGTIARVCE
SQGWECVVVTGDKDSLQLITPTTKVKLATGKGDSKDMNKAVFEEAYGFAPIHMIDLKALM
GDASDNIAGVKGIGEKTAMTLLHQYESVEKLYAAMPEIDAKPGVIKKLQEGEQDARHSYW
LATIATNAPLEFAPKDALRKSPTDDLYPLFLRLEFTKLIDKWNLRPDTGVTQMPEQTADH
YVTMETITTAEQGETALARWREAKWVAVSVLPDLSGVCVDCKTGEHESVLSQVFFDGYQG
EFGGFITAVFSVDIAKVAHNVKDLMGLLLENKLPIQGFVYDTALAAYLLDATAGKYELPR
LFTAYYNAELPKPVHLEADAFSMLGDNAQSCAAFASYTTAVSALYETTSEKLQEHGQMEL
LLEIELPLCTVLAEMEQVGCGVDGKALQDFSAMLSQRIDTAEADIYAQAGHEFNINSPRQ
LGVVLFDELGLPHGKKTKTGWSTNAEVLDKLSAEHEIVSQVLTYRQLSKLKSTYADGLYK
AIASDGRIHSSFQMTVTATGRLSSTEPNLQNIPTRTELGSEIRRMFVGQEDWVLVDADYS
QIELRVLAHMAQDEVMANAFTSGTDIHTATASQVFNVAPEDVTSELRRRAKAVNFGIVYG
ISPFSLSQDISSTVAEAKGYIQAYLETFSGVGAYMKNVVEQAKVDGYVETLYHRRRDLPE
LSASNFIQRSFGERVALNMPIQGTAADVMKLAMIAVWKRLKAEGLQGRLVLQVHDELIVE
CPPAEAELVARLLEEEMAGVCQWSVPLTAQAHWGKDWKSAKG
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgaaattgatggtcattgatggcaatagcattgtcaatcgtgcctattatggcatccgt
accctgaccaaccaagaagggttgcataccaatgctatttatggttttttaaccaccctg
caacggctgttagacgaggaaaaacccgaggcagtgtgcgtcacgtttgacgtccatgcc
cccaccttccgccatgaagcagacagtgcctacaaagccacccgaaagggaatggatgag
gaattgcgccagcaaatgcccgttctgaaacaggtgctagatgccatgcaaatcccccgt
tacgaaatggctggctgggaagcggatgacctgattggcaccattgcccgcgtgtgtgaa
agccaaggttgggagtgcgtggtggtgactggggataaggatagcttgcagctgattacc
cccacaacaaaggtgaagcttgccactggcaaaggcgatagcaaagacatgaacaaggcg
gtttttgaagaagcttacggctttgcacccatccacatgattgacctgaaagccctcatg
ggggatgcctctgataacattgctggggtgaagggaattggggaaaaaaccgcaatgacc
ctgcttcatcagtatgaaagtgtagaaaagttatatgcggccatgccagaaatcgacgcc
aaacccggtgtgattaagaagctacaagaaggggagcaagacgcccgtcacagctattgg
ttggccaccattgccaccaatgcgccgttggaatttgcacccaaggatgccctgcggaaa
tctcccactgatgacttgtatcccctgtttttgcgactggaatttaccaagctcattgat
aagtggaacctgcgcccagacactggggtcacccaaatgccagagcaaaccgcagaccac
tatgtcaccatggagaccatcaccactgcagagcaaggggaaacggctttggcgcgttgg
cgtgaggcaaaatgggtggcagtgagcgtgctaccagatttatctggcgtgtgtgtggac
tgtaaaacaggagaacacgaaagtgttttgtctcaagtgtttttcgatggctatcaaggg
gaattcggtggctttataaccgctgttttctcggttgatattgcaaaagttgctcataat
gtgaaagatttgatgggcttgttgctagaaaataagttgcccatccaaggctttgtctac
gacaccgctttggcggcctatttgttagatgccaccgctggcaaatatgaattgccacgg
ctttttaccgcttattacaacgcagaactaccaaaacctgtccatttggaggcggatgcc
ttctcaatgctgggtgacaacgcccaatcttgcgccgctttcgccagttataccaccgct
gtatctgccctctacgaaactacttctgaaaagttgcaagaacacggtcaaatggaactg
ttgctggagatagagttgccactttgtacggttttggctgaaatggagcaggtaggttgt
ggggtggatggcaaggcactgcaagacttttctgccatgctgtctcagcggattgacacc
gccgaagctgatatttatgcccaagcaggccatgaatttaacatcaactcccccaggcaa
ctgggtgtggtgctcttcgacgaactgggcttgccccatgggaagaaaaccaaaacaggc
tggtccaccaatgccgaagtgctggataaactgtctgccgagcatgagattgtatcccaa
gtgctgacgtatcggcagctatctaagttgaaatccacctatgccgacggcttgtacaaa
gccatcgccagcgacgggcgcattcattcctcgttccaaatgacagtcaccgccacaggt
cgattgtcctccaccgaaccaaacctgcaaaacatccctactcgaacggagctggggagt
gaaatccgccgtatgtttgtggggcaagaggattgggtgctggtggacgctgactattcg
caaatcgagcttcgtgtgttggcccatatggcgcaagatgaagtgatggcaaacgccttc
acctctggcaccgatattcacaccgctaccgcgtcccaagtgttcaatgtagcaccagag
gacgtgaccagcgagctccgtcgccgtgctaaggcggtgaactttggcattgtctatggc
atttccccattctccttgtcacaggacatttcctccacagtggctgaggcaaaagggtat
attcaagcctatttggaaacgttttctggggttggtgcctatatgaaaaacgtggtggaa
caggcgaaagtggatggatacgtggagacgctgtaccaccgtcgtcgtgatctgccagag
ctgtctgcgtccaatttcatccaacgtagttttggggaacgggtggcgctgaatatgccc
atccaaggcaccgccgccgatgtgatgaagctggcgatgattgccgtttggaaacggttg
aaagcagagggattgcaaggccgtcttgtgttgcaagtccacgatgaattgattgtagag
tgcccacctgcagaagcggaattggtggcacgattgttagaagaagaaatggctggggtg
tgccaatggagtgtgcccttgaccgcccaagcccattggggcaaggattggaaatctgca
aaaggataa
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