Bacillus infantis: N288_08745
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Entry
N288_08745 CDS
T02860
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bif
Bacillus infantis
Pathway
bif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N288_08745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bif03019
]
N288_08745
Messenger RNA biogenesis [BR:
bif03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N288_08745
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
RMMBL
DUF4453
pre-PUA_NIP7
Motif
Other DBs
NCBI-ProteinID:
AGX03671
UniProt:
U5LAE0
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All DBs
Position
complement(1598846..1600513)
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AA seq
555 aa
AA seq
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MKFVKNDQTAVFALGGLGEIGKNTYAVQFQDEIILIDAGIKFPEDELLGIDYVIPDYTYL
VKNEDKIKGLFITHGHEDHIGGIPYLLRQVNIPVYGGKLALGLLRNKLEEHGLLRKTRMI
EIKEDDIIKFRKTSVTFFRTTHSIPDSYGVVVKTPPGQVVHTGDFKFDFTPVGEPANLTK
MAEIGKDGVLCLLSDSTNSEIPNFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQ
VIEAAVTNGRKVAVFGRSMEAAINIGRELGYISAPKDVFIDAQQINRLPANQVTILCTGS
QGEPMAALSRIANGTHRQIQINPGDTVVFSSSPIPGNTISVSRTINMLSRAGAEVIHGPL
NDIHTSGHGGQQEQKLMLRLIKPKFFMPIHGEYRMQKMHSKLAIDCGIPEENCFIMDNGE
VLALSEDTAQVAGKIPSGSVYIDGSGVGDIGNIVLRDRRILSEEGLVVVVVSINMKDFKI
SAGPDIISRGFVYMRESGDLISDAQSLISKHLNKVMERKTTQWSEIKNEITDTLSPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtcaagaacgatcaaacagctgtatttgcccttggaggacttggggaaatc
ggcaaaaacacttatgcagtccagttccaggatgaaatcatcctgatcgatgctggcatt
aaattccctgaggatgagcttctgggaattgattatgtaatccctgattatacgtattta
gttaaaaacgaagacaaaatcaaaggcctcttcattacgcacggacatgaagaccatatc
ggcggcattccttatctattaagacaggtgaatattcctgtgtacggcggtaagctcgcc
cttggccttcttcgcaataagctggaagagcatggccttttgagaaagacaagaatgatt
gaaatcaaggaagatgatattatcaaattccgaaaaacttctgtcactttcttccggact
acacacagcatccctgattcatatggggtcgtagtgaaaactccgccggggcaggtagtc
cataccggggatttcaagtttgacttcactcctgtcggggagcctgcgaaccttacaaaa
atggcagagatcggcaaggatggtgtcctatgcctcctttctgacagcaccaacagtgaa
attcctaatttcactatgtctgaacgccgtgtaggagaaagcattcatgacattttccgc
aaagtggatggacggattatttttgcaacattcgcttctaatatccatcgccttcagcag
gttatcgaggctgctgtgaccaatggcagaaaagtggctgtttttggccggagcatggaa
gctgcgatcaacatcgggcgggagcttggctatataagcgctcctaaggatgtattcata
gacgcacagcagatcaacaggctcccagccaaccaggttaccatcctttgcacaggaagc
cagggagagcctatggcagccctatcacggattgccaatggaacacaccgccagatccag
atcaacccaggtgatacagtagtgttctcatcttctcctattccgggaaatacgatcagt
gtcagcagaacaatcaacatgctgtcccgtgcaggtgcagaagtcattcacggtccgctg
aacgacatccatacttccgggcatggcggccagcaggagcaaaaactgatgcttcgactg
atcaagccgaaattcttcatgccgatccacggcgagtacagaatgcagaaaatgcactct
aaacttgcgatagattgcggcattcctgaagaaaactgctttataatggacaatggagaa
gttctggccctgagcgaggataccgctcaggtggcaggaaagattccttcaggttctgta
tatatcgacggaagcggtgtgggtgacatcggaaatatcgtcctcagagaccgcaggatc
ctttctgaggaaggtctggtcgttgtcgtagtcagcatcaacatgaaagactttaagatt
tccgcaggtcctgatatcatttcccgcggcttcgtctacatgcgtgaatcaggcgacttg
atcagcgatgcccaatccttgatctctaagcatctgaacaaggtcatggaaagaaaaacg
acacagtggtctgaaattaaaaatgaaattactgacacactatcacctttcctttatgaa
aaaacaaagcgccgtccaatgatccttccgatcattatggaagtgtaa
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