Bacillus infantis: N288_10035
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Entry
N288_10035 CDS
T02860
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bif
Bacillus infantis
Pathway
bif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N288_10035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bif03019
]
N288_10035
Messenger RNA biogenesis [BR:
bif03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N288_10035
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
BRCA2
Motif
Other DBs
NCBI-ProteinID:
AGX03925
UniProt:
U5L945
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Position
1847662..1849335
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AA seq
557 aa
AA seq
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MNNRKNESIRLIALGGVGEIGKNMYLAEVDEDLYVIDAGLMFPENEMLGIDIVIPDVSYL
VQNKDRIRGIFLTHGHEDHIGALSYVLKKVSVPVYGTKLTLALAKAKMKEQDYRGKAELI
EINSDSVLEFEHSSVSFFRTNHSIPDSVGICIHTSEGSIVYTGDFKFDQAAPELYKAEIG
KMAGIGDNGVLCLLSDSTDAERPGYSTSEAVVQKAMAHAFYSAKGRVIAACFASDLIQIQ
HIFDAAEESGRKVAVAGKSIQKVYDLAVQLGYLAVKDDILIPLSELGSFRDHEVVILTAG
SQGEPIEALQKMAKRTHRQVTIQEGDTVYLAAAPIRGGEVFIYKTMDMLYRAGATVITGK
NSATASSHGSQEELKFMINLMKPKHFIPVHGEYKTLKSHGKLAAECGISQDSILIPEKGD
VFEIKDGRIKQSGRVPAGNVLIDGIGVGDVGNIVLRDRRLLSQDGILIVVVTLNRHDKQI
AAGPEIISRGFVYVRESEKLLVQAADMVKEIVHRGSQKESFDWAAVKQDMRDELNQFFYE
KTKRRPMILPIIMEVKQ
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
gtgaataatagaaaaaatgaaagcatcaggctgatcgccctcggcggcgtcggggaaatc
ggcaaaaatatgtaccttgcagaagtggatgaagatctgtatgtcatcgacgcagggcta
atgtttccggagaacgaaatgcttgggattgatattgtgattcccgatgtttcctatctg
gtacagaataaagacagaatccggggcattttcctgacacatggacatgaggaccacatt
ggggctctttcttatgtgcttaaaaaggtatctgtccctgtctatggcacaaagctgacc
cttgctttggccaaggcgaagatgaaggagcaggactacaggggcaaagcagaactgatt
gaaatcaattccgattcagtgcttgaatttgaacattcgagtgtatcttttttccggacc
aatcacagcatccctgattcagtcggaatatgcatccatacttcagagggaagcatcgtc
tacaccggcgactttaagtttgaccaggctgctcctgaattgtacaaagcggagattgga
aaaatggccggaatcggcgacaatggggtattatgccttctgtcagacagtacagatgca
gaaaggcccggatactcaacatccgaggcagtcgtgcaaaaagcgatggcacatgcattc
tacagcgcaaaaggaagggtcatcgcagcctgctttgcttctgatttaattcagatccag
catatattcgatgcggcagaggaaagcggcaggaaagttgccgtggcagggaagagcatc
caaaaggtatatgacctggcagtccagctcggttatttggctgtcaaagatgatatcctc
atacctttatcagagcttggcagcttcagggaccatgaagtggtcatcctgacggccggc
tcccagggcgagccgatcgaggcgctgcagaaaatggcgaaaaggacccacaggcaggta
acgatccaggaaggtgacaccgtctacctcgctgctgccccgatcagagggggagaagtg
ttcatctataagacgatggatatgctttacagggccggagcgaccgtgatcaccggaaag
aacagtgccactgcatcaagccatggaagccaggaagaattgaaattcatgatcaatctg
atgaagccgaaacatttcatccctgtgcatggagaatataaaaccttgaaatcgcatgga
aagctagcagcagaatgcggaatcagccaggactcgatcctcattcctgaaaaaggggat
gtctttgaaatcaaggatggcagaatcaagcaaagcggccgggtgccggctggaaatgta
ctcattgacgggatcggcgttggtgatgtcgggaatatcgtcctgagggacagaaggctg
ctttcacaggacgggatcttgattgttgtcgtgacgctgaaccgccatgataagcagata
gcggcagggcctgaaatcatttcacgcggttttgtatatgtgcgggaatctgaaaagctg
ctggttcaggcagccgatatggtcaaggaaatcgtccatcgcggctcccagaaagaaagt
tttgactgggctgctgtcaaacaggatatgcgcgatgagctcaatcaattcttctacgaa
aaaacaaagcgccgtccgatgatcctgccgatcatcatggaagtgaagcaatag
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