Bacillus infantis: N288_21565
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Entry
N288_21565 CDS
T02860
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bif
Bacillus infantis
Pathway
bif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N288_21565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bif03019
]
N288_21565
03016 Transfer RNA biogenesis [BR:
bif03016
]
N288_21565
Enzymes [BR:
bif01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
N288_21565
Messenger RNA biogenesis [BR:
bif03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N288_21565
Transfer RNA biogenesis [BR:
bif03016
]
Prokaryotic type
tRNA degradation factors
N288_21565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_RNR_1st
S1_RRP5
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AGX06158
UniProt:
U5LFF9
LinkDB
All DBs
Position
complement(3956195..3958537)
Genome browser
AA seq
780 aa
AA seq
DB search
MENNIKQIVDKLLHFMKDEAYKPLTVQEMEEAFGIEDSSDFKDFVKALVVMEQKGLVVRT
RSNRYGLPDRMNLIKGKLSGHAKGFAFVIPEEPGLDDIFIPPNETNNAMHGDIVLARVSS
ESSGQRREGTVVRILERGVQQIVGTYVESKNFGFVLPDDKKFTSDIFIPKSASKGAIEGH
KVVVKLTTYPEGRKSAEGEVLEILGHKNDPGVDILSVIHKHGLPMEFPKEVLEQANDTPD
SIDESEIKNRRDLRDQTIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVTYYVRENT
PIDQEAEERATSIYLVDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMEMDSSGEVVNHEI
FQSVIKTTERMTYHDVNKILTDKDEELMKRYEPLVPMFQLMEELAAVLRKKRMGRGAIDF
DFKESKVLVDEEGKPSDVVLRERSVAERLIEEFMLAANETVAEHFHWMDVPFIYRIHEDP
KEDKLRRFFEFITNFGYIVKGTANSVHPRALQEIIEEVQGTPEEMVISTVMLRSMQQAKY
DPESLGHFGLSTEFYTHFTSPIRRYPDLVVHRLIRTYLIEGDLSQATRERMNSRLPDIAE
HSSNMERRAVEAERETDELKKAEYMADKIGEEYDGIISSVTNFGMFVELPNTIEGLIHVS
YMTDDYYRYDERHFAMIGEKTGNVFRIGDEITVRVINVNKDERSIDFEIVGMKGPRKRDD
RDAPRVFKTGSTEKKPRRGKAGEGPKGRSGSSKGKSGGPARKEKKHFENAPKAKRKKKKR
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataatattaagcaaatcgtggataagcttctccactttatgaaagatgaagca
tataagccactgaccgtccaggagatggaagaggcattcggaatcgaggattcttccgat
tttaaagactttgtgaaggcccttgtggtcatggagcagaaagggcttgttgtccggaca
cggagcaaccgctacggcctgccggacaggatgaatctgatcaaaggtaagctgtccggc
catgcaaaaggctttgcttttgtcattcctgaagagcctggccttgatgatatctttata
ccgccgaatgagacgaataatgctatgcatggcgatattgtccttgcaagggtttcttct
gaatcttccggccagaggcgtgaagggacggtcgtgcgcattctcgaacgaggtgtccag
cagattgtcgggacatatgttgaaagtaaaaatttcggctttgtgctcccggacgacaaa
aagttcaccagcgatatttttatcccgaaatcagcttctaaaggggcaatagaaggacat
aaggtcgttgtcaagctgacgacgtatccggaggggcgcaagagtgctgaaggggaagtc
cttgagatccttggccataaaaatgatccaggcgtggatatcctgtctgtcatccacaaa
catgggctgccgatggaattcccgaaagaagtgctggagcaggcgaatgatacacctgac
agcattgatgaaagtgaaatcaagaaccggcgcgatctccgcgaccagacaatcgtcacg
attgacggcgctgatgcgaaggacctggatgatgcggtaactgttactaagcttgaaaac
ggaaactataagctcggagtacatattgccgatgtgacgtattatgtgcgcgagaataca
ccgatcgatcaggaagcggaagaacgggcgacaagtatttacttggtggaccgggtcatc
ccgatgatcccgcacagattatccaatggcatctgttcccttaatccgcaggttgaccgc
ctgaccctttcctgtgaaatggaaatggacagctccggtgaagtggttaatcatgaaatc
ttccagagtgtcattaaaacgacagagcgtatgacttatcatgacgttaacaagatcttg
accgataaagacgaagagctgatgaagcgctatgagccgcttgtcccgatgtttcagctt
atggaagagctggcagcggtgctccgcaagaaacggatgggccgcggcgccatcgacttt
gattttaaagagtcaaaggttcttgttgatgaagaaggaaagccaagtgatgtcgtactc
cgcgaacgttctgtggcagagcgcctcatcgaggaattcatgcttgcagccaatgaaacg
gtcgccgagcatttccattggatggatgtgccgttcatctaccgtattcacgaagatccg
aaggaagataagctgagaagattcttcgagtttattacaaacttcggttacattgtaaaa
ggcacggcaaactctgtgcatccgcgcgccctccaggaaatcattgaagaggtgcagggt
acacctgaggaaatggtaatttcgaccgtcatgctgcgttcgatgcagcaggcgaaatat
gatcctgagagcctcggccactttgggctgtcgactgagttctatactcatttcacatca
ccaatccgccggtatccggacttggttgtccacaggctcatccgcacctatctgattgaa
ggcgatttaagccaggcgacaagagagcggatgaattcaaggcttcctgatattgccgag
cattcctccaatatggagcgccgcgcggtcgaagctgaaagggaaacagatgagctgaag
aaagcagaatatatggctgataaaattggcgaagaatatgatggcatcatcagctcagtt
acaaacttcggcatgttcgtcgaattgccgaacacgattgaaggtctgatccatgtcagc
tatatgacggacgattattaccgctatgatgaacgccatttcgcgatgatcggcgagaaa
accggcaatgtgttccggattggcgacgaaattacagtacgcgtcattaatgtcaacaaa
gatgagcgctccatagattttgaaatcgtcggcatgaaaggcccccggaagcgtgatgat
cgggatgcgccgcgagtgttcaagacgggcagcacagaaaagaagccgcgcagaggcaaa
gcaggcgaaggcccaaaaggacgcagcggcagctcgaaaggcaaaagcggcggacctgcc
cggaaagagaaaaagcactttgaaaatgcgccaaaagccaagcgtaagaaaaagaaacgc
taa
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