Candidatus Bipolaricaulis sibiricus: BIP78_0177
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Entry
BIP78_0177 CDS
T05809
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bih
Candidatus Bipolaricaulis sibiricus
Brite
KEGG Orthology (KO) [BR:
bih00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BIP78_0177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bih03021
]
BIP78_0177
Transcription machinery [BR:
bih03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BIP78_0177
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
Sigma70_r1_2
HTH_3
GPP34
HTH_Crp_2
HTH_31
MarR_2
HTH_24
HTH_28
PhetRS_B1
UPF0122
Motif
Other DBs
NCBI-ProteinID:
QAA75945
UniProt:
A0A410FS72
LinkDB
All DBs
Position
171503..172348
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AA seq
281 aa
AA seq
DB search
MTATALRERSVGSTVRLTREDEVELAKRIERDDKAAREQLIMANQGLIWHVLRTEFRGFI
YLWDDLFQEGQVGLIKAVDRFDWRRGCKFSSYAVWWIRREIQLALGRWWTGAARIPESRL
KELRAFNLATQKLADRLSRPPTPEEIAGELGVPLDNVYDLLKMMVAGRRLVSLEALEERG
RSVMHLVADESLPDAEEGLEPRLRHSLRRVIGVSLTEKQRQVICLRYGLDLDGEPLRPLS
QREIAQQMDITPQAVSRIEERALARIRAEMDLITQSLRRID
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgaccgcgcttcgtgagcgcagcgtcggctcgaccgtgcggctcacccgggaa
gacgaggtcgagctcgccaagcggatcgagcgggacgacaaggccgcgcgcgagcagctg
atcatggccaaccaggggctcatctggcacgtcctccgcacggagttccgcgggttcatc
tacctctgggacgacctgttccaggaggggcaggtcgggctcatcaaggcggtggaccgg
ttcgactggcgcaggggctgcaagttcagctcgtacgccgtgtggtggatccgccgcgag
atccagctcgccctcggtcggtggtggacgggggcggcccgcatcccggagtcgcggctg
aaggagctgcgggcgttcaacctggcgacccagaagctcgcggaccggctgagtcgcccc
ccgactccggaggagatcgcgggtgaactgggggtccccctcgacaacgtgtacgacctc
ctgaagatgatggtcgctggccgccggctcgtgtcgcttgaggccctggaggagaggggc
cggagcgtgatgcacctcgtcgcggacgagagcctgcccgatgcggaggagggcctcgaa
ccgcggcttaggcacagcctgcggcgggtgatcggggtgtcgctgaccgagaaacagcgc
caggtgatctgcctccgctacgggctcgacctcgacggtgaacccctccgaccgctctcg
cagcgggagatcgcgcagcagatggacatcaccccccaggcggtgtcgcggatcgaggag
cgggccctggcccggatccgggcggagatggacctcatcacgcagtccctccgccgcatc
gactga
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