Candidatus Bipolaricaulis sibiricus: BIP78_0393
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Entry
BIP78_0393 CDS
T05809
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bih
Candidatus Bipolaricaulis sibiricus
Pathway
bih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BIP78_0393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bih03019
]
BIP78_0393
Enzymes [BR:
bih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BIP78_0393
Messenger RNA biogenesis [BR:
bih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BIP78_0393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_30
BcrAD_BadFG
AAA_19
Flavi_DEAD
Str_synth
DUF1989
Motif
Other DBs
NCBI-ProteinID:
QAA76159
UniProt:
A0A410FSI6
LinkDB
All DBs
Position
complement(384758..385981)
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AA seq
407 aa
AA seq
DB search
MKFQEFSFHPRIESGIKAVGYVQPTPIQEKAIPVVLAGRDLIGVAQTGTGKTAAFVLPIL
QHLAERERGHVRALILAPTRELAEQIHQVVCALGKELGIRSVAAYGGVNKRPQVMALRRG
AEVVIACPGRLLDLHGDRAIDLSRVEVLVLDEADRMCDMGFLPDIRRILTLLPRARQTLF
FSATMPPEIRRLAGSILRDPATVEVDAAAPAKTVSHAFYPITEGRKRDLLLALLRGPATG
RVLVFTRTRSRTQSLASYLSRSGFAAAAIEGDMSQRDRQEALDGFRSGKYAVLVATDVAA
RGIDVEDITHVINFDMPDSVDAYTHRVGRTGRISKTGQALTLSAPTDKLLRRWVEKAVGK
PIASCRLEGFDYGVAATSAQVSPAHAHQSRMGAPRSRYGRRRTYLRQ
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
gtgaagttccaggagttctcgtttcacccccggattgagtccgggatcaaagcagttggc
tacgttcaacccaccccgatccaagagaaggcaatccctgttgtcctcgcaggccgcgac
ctgatcggcgttgcccagaccggaaccgggaagaccgccgcgttcgtgctccccatcctc
cagcacctcgccgaacgggagaggggccacgtgcgagccctcatcctcgccccgacgcgc
gagctcgccgagcagatccatcaggtggtgtgcgcgctgggaaaggaactcggcatccgc
agcgttgccgcctacggtggggtgaacaagcggccccaggtcatggcgctccgccgcggt
gcggaagtggtcatcgcctgcccgggacggctccttgacctccacggggaccgggcgatc
gacctttcgcgcgtggaggttctcgtcctcgacgaggcggaccggatgtgcgatatgggg
ttcctccctgacattcggcgcatcctcacgctcctgccgagggctcggcagaccctgttc
ttttcggcgacgatgccccctgagatccggcgcttggcggggagcatccttcgcgatccg
gccacggtcgaggtggacgctgccgccccggcgaagacggtgtcccacgcgttctacccc
atcaccgagggccgcaagcgcgacctccttctcgccctcctccgggggccggccacgggg
cgcgtgctcgtgttcacgcgcaccaggagccggacgcagagcctggcctcgtacctcagc
aggtccgggttcgccgccgcggcaatcgagggcgacatgtcccagcgggaccggcaggag
gcgctcgacgggtttcgctcggggaagtacgcggtgctcgtcgccacagacgtcgcggcg
cgggggatcgatgtcgaggacatcacccacgtcatcaacttcgacatgccggacagcgtc
gatgcctacacgcaccgcgtcgggcgcacggggcggatctccaagacagggcaggcactg
actctctctgcgcccacggacaagctgctccgccggtgggtcgagaaggccgtggggaaa
ccgatcgcctcgtgccgcttggagggcttcgactacggggtggctgccacctcagctcag
gtttcccctgcccatgctcaccaatcgcgaatgggcgctcctcgctcccgctacggccgc
cggaggacgtacctgcgccagtag
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