KEGG   Candidatus Bipolaricaulis sibiricus: BIP78_0560
Entry
BIP78_0560        CDS       T05809                                 
Name
(GenBank) hypothetical protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
bih  Candidatus Bipolaricaulis sibiricus
Brite
KEGG Orthology (KO) [BR:bih00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bih03400]
    BIP78_0560
Enzymes [BR:bih01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BIP78_0560
    5.6.2.6  RNA 3'-5' helicase
     BIP78_0560
DNA repair and recombination proteins [BR:bih03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    BIP78_0560
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr DEAD WHD_4th_Lhr WHD_3rd_Lhr Helicase_C WHD_2nd_Lhr ResIII AAA_25
Other DBs
NCBI-ProteinID: QAA76326
UniProt: A0A410FTH1
LinkDB
Position
complement(559791..564092)
AA seq 1433 aa
MREPTSEMPDPLARFSPAVARWFREALGEPTPAQALAWPVIADGAHTLVLAPTGSGKTLA
AFLWTLDRLLTQPAEAVTPSVHTLYVSPLKALGYDIERNLHVPLAGIRATAHARGIALPE
VRVGVRTGDTPPAERQRLVRRPPHILITTPESLHLILTSPRARETLRGVRTVIVDEVHAV
VDNKRGAFLSVLLERLEALGARPVQRIGLSATMRPLDAMARFLGGFGDDEGAFREREVRV
VDAGLRKELDLRVVAPTPDMASLPEDSIWPSIYARIHELILAHRSTIVFVNNRRTAERVA
AEVNELAGHELVQVHHGSVSWERRRELEERLKRGELPALVATASLELGVDMGLVDLVVQV
ESPHGVARGLQRVGRAGHLYRAPSRGRLLPKTRGDLLEMAAVARAMRRAEIEPARIPKGC
LDILAQQIVAVVAGGPIALDELVRILRRAYPFHDLDRSTFLSVLRMLAERGAGPWAVRPR
LAWDRVHGVVQPLPGTRSLALTGGGAIPDTGQYGVYTEGGDRIGELDEEFVYEARTGEVV
VLGTNRWRILDITHDRVVVAPGEGPAKVPFWKGEAYGRDVHLGARVGELAREIEARLADP
DLAAWLEEECSLDPPAAMNLVQYVAGQWERGAVPTDRRAVIEGFPDEAGGMRLAVLTPYG
RRFHLALRLAILARFREQEGIQPDSLHGDSGILFRLTQVPFSRAVALIRSVEPHEVERLV
LGELANSPLFGLRFRENAGRALLLPRDRPGRRTPLWLRRLSARDLLDAARARPGFPIVTE
TYREILHDVLPLAEARDWLRGLTTGQIELALRQALAPSPFCSSLLWEFQAAYLYQWDEPK
PGPVPTGLAEDDLLVLPGRDLAEWLDPGALERLQRDLGGAEQEARTGAEVLAHVQRVGDL
GDEELSRIVSPAARAAAAELLATGSLARVAVPGSVPPERIVAGDDLPLYRAALAGDGEAQ
VAIVRRWAGTRALVTLSQLRDRYPFPAETIEDAVSGAPFVAVTWRGERAWTQRAALDRLR
RLTLALRRARIPPRRPADLQAFLLGHQHRTPAARLRGPEGVAQVLRELRGIALPWAQWNE
ETLPARVEGYREGWVQDLLATGEYLWLGRPGPGKDIAVAFLRREDLPWLGKAYPPPAEAA
LPPAAERLRGALAKRGASFLVEVAGDVGIPAARCASLLWELARVGRVTHDGLAPLQAGPP
PARPGKARVRQGGSGRWSLVPLPSGPLTDGERGSLVRLLLSRYGILSRGILALDGAAAPW
SEVYPLLSRLEWRGELARGAFVDGLAGAQFAWAEVLPQLERGGEGYALVPASDPAVLYGA
GAPFPVVSPSHPEWRLRRGPGAYLVLRGGAPILAVEGAGERLTPLGELAPDALRHALALL
PALVAGPLRRLRVRTWNGASVLGSPIERILNDLGFQRSPSALVLYRRYGSERI
NT seq 4302 nt   +upstreamnt  +downstreamnt
atgagggaacccacgtctgagatgcccgatccgctcgcgcggtttagccctgccgttgcg
cgctggtttcgggaggcgttgggggagccgaccccagctcaagccctcgcctggccggtg
atcgcggacggagcccacacgctcgtcctcgctcccaccggatcggggaagaccctcgcc
gcgttcctgtggaccctcgatcggctgctcacccaaccggcggaagccgtgactccgtcg
gttcacacgctgtacgtgtctcccctgaaggccctcgggtacgacatcgagcggaacctc
cacgtgcccctggcgggcatccgggccacggcccacgctcgcgggatcgcccttcccgag
gtccgggtcggggttcgcaccggggacacgcctccggcggaacggcagcgactcgtgcgc
cggcccccccacatcctcatcacgaccccggagtcgcttcacctcatcctcacctccccc
cgggctcgggagacgctccggggcgtccggacggtgatcgtggacgaggtccacgccgtg
gtggacaacaaacggggcgcgtttctgtccgtgctcctcgagcggctggaggcgctgggc
gcgcgtccggttcagcggatcggcctttcggccacgatgcgcccgctggacgcgatggcc
cggtttctcggagggttcggcgacgacgagggggcgttccgcgagcgggaggtgagggtc
gtggacgccggcctgaggaaggagctcgacctgcgggtcgtggccccaacgccggacatg
gcctccctccccgaggattcgatctggccctcgatctacgcccggatccacgagctgatc
ctcgctcaccgctcgacgatcgtgttcgtcaacaaccgccgcaccgcggagcgggtcgcc
gccgaggtcaacgagctcgccggccatgagctcgtgcaggtccaccatgggtccgtgtcc
tgggagcggcgccgcgagctcgaggagaggctgaaacggggagagcttcccgcgctcgtg
gccacggcgagcctcgagctgggagtcgacatggggctcgtggacctcgtcgtccaggtg
gagtccccgcacggggtggcgcgggggctgcagcgggtggggcgggccggacacctctac
cgggccccgtcccgggggaggcttctgcccaagacgcggggggacctcctcgagatggcg
gcggtggcgcgggcgatgcggcgggcggagatcgagccggcccgcatcccgaaggggtgc
ctcgacatcctcgcccagcagatcgtggccgtcgtcgcgggaggcccgatcgccctcgac
gagcttgtccgcatcctccgccgggcctatccgttccacgatctcgatcggagcacgttc
ctttccgtgctgcggatgctcgcggagcgcggggccgggccgtgggcggttcgaccgcgc
ctcgcctgggaccgggtgcacggcgtggtccagccccttcccgggacgcgaagcctcgcc
ctcacgggcggtggggcaatcccggacacggggcagtacggggtgtacacggaaggaggg
gacaggatcggggagctcgacgaggagttcgtgtacgaggcgcggaccggggaggtcgtc
gtgctggggacgaaccggtggcggatcctcgacatcacccatgaccgcgtcgtcgtcgcc
cctggggagggcccggccaaggtcccgttctggaagggggaggcctacggccgcgacgtc
cacctcggggcccgggtgggagagctcgcgcgcgagatcgaggcccggctcgccgacccg
gacctcgccgcctggctcgaggaggagtgctccctcgatcccccggcggcgatgaacctc
gtccagtacgtcgcgggccagtgggagaggggggcggtgcccaccgaccggcgggccgtg
atcgaggggttccccgacgaggcaggagggatgcgcctggctgtcctcaccccgtacggg
aggcgattccacctcgcgctgcggctggcgatcctcgctcggttccgggaacaggaaggg
atccagcccgactccctccacggggactccgggatcctgttccggctgacccaggtcccg
ttttcccgcgccgttgccctcatccggagcgtggagccccacgaggtggagaggctggtc
ctgggcgagctcgcgaactcgccgctatttgggctccggttccgggagaacgcggggcgg
gccctcctcctcccccgggaccggccgggaagacgcacgccgctctggctgaggaggctt
tccgcccgcgacctcctcgacgcggcccgcgcccggcctgggttccccatcgtcactgag
acgtaccgggagatcctccacgacgtcctcccgctggcggaggcacgggactggctgcgc
gggctgacgaccggccagatcgagcttgccctccgccaggccctggccccatcgccgttc
tgctcttcgctgctttgggagttccaggccgcctacctctaccagtgggacgagcccaag
ccggggcccgtccccaccggcctggccgaggacgacctcctcgtcctgcccggccgggac
ctcgcggagtggctggatcccggggcgctggagcggctgcagcgggacctgggtggggcg
gagcaggaggcccgcaccggcgccgaggtcctcgcccatgtacagcgcgtgggggacctc
ggggacgaggagctgtcccggatcgtctcccccgcggcgcgggccgcggcggcggagctc
ctggccaccgggtccctggcgcgggtggcggtccctggatccgtccctccggagcggatc
gtggctggggacgacctccccctctaccgcgcggccctcgccggggacggggaggctcag
gtcgccatcgtgcgccgctgggccgggacccgggcgctcgtcaccctctcccaactccgc
gatcggtacccgttcccagcggagacgatcgaggacgcggtgagcggggccccgttcgtg
gccgtgacctggcggggggagagggcgtggacccagcgggctgccctcgaccggctgcgc
cgcctcaccctggccctgcgtcgggcccggatccccccccgccgacccgccgacctccaa
gcgttcctccttggccaccagcaccggacccccgcggcccgcctccgcgggcccgagggt
gtggcccaggtcctgcgcgagctccgggggatcgcgctcccatgggcacagtggaacgag
gagacgctgccggcgcgggtggaggggtaccgggaaggttgggtccaagacctcctcgcg
accggggagtacctgtggctgggccggcccgggccggggaaggacatcgcggtcgcgttc
ctgcggcgggaggacctgccctggctggggaaggcctatccccctccggcggaagccgcc
cttcccccggcggcggagcggctccgaggggccctggccaagcggggagcgagcttcctc
gtcgaggtcgcgggggacgtggggatccccgcggctcggtgcgcgtccctgttgtgggaa
ctggctcgcgtggggcgggtgacccacgacgggctggcccccctccaggcgggaccccct
ccggcgaggcccgggaaggcgcgggtccggcaagggggcagcgggaggtggtccctcgtc
cctttgccgagcgggcccctcacggacggagagcgggggagcctcgtgcggctgctcctc
tcccgctatgggatcctctcccgggggatcctcgccctcgacggggccgccgccccgtgg
agcgaggtctaccccctcctcagccgccttgagtggaggggggagctcgcgcggggggcc
ttcgtggacggtctcgccggagctcagttcgcctgggcggaggtgctgccccagctggag
cgcggcggggagggctacgcgctcgtacccgcgtccgaccccgcggtgctgtatggggcg
ggggctcccttccccgtcgtgagcccctcccacccggagtggcgcctccgccgcgggcca
ggggcatacctcgtcctccgcgggggtgcaccgattctcgctgtcgagggagcgggggaa
cggctgaccccgctgggggagctggcgccagacgcgctccgccacgccctcgccctcctc
cccgcgctcgtcgccggaccgctgcggcggctgagggtgcgcacctggaacggggcatcg
gtgctgggatccccgatcgaacggatcctcaacgaccttgggtttcagcggagcccgagc
gcgttggtcctgtaccgccggtacggatccgagcggatctga

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