Candidatus Bipolaricaulis sibiricus: BIP78_0663
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Entry
BIP78_0663 CDS
T05809
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bih
Candidatus Bipolaricaulis sibiricus
Pathway
bih03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bih00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BIP78_0663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bih03021
]
BIP78_0663
03400 DNA repair and recombination proteins [BR:
bih03400
]
BIP78_0663
Enzymes [BR:
bih01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BIP78_0663
Transcription machinery [BR:
bih03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BIP78_0663
DNA repair and recombination proteins [BR:
bih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BIP78_0663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Biotin_lipoyl
RPOC_hybrid
DUF7129
Motif
Other DBs
NCBI-ProteinID:
QAA76429
UniProt:
A0A410FTD4
LinkDB
All DBs
Position
660116..665041
Genome browser
AA seq
1641 aa
AA seq
DB search
MVISGDDIERIKLGLASSDEMLSWSRGEVTNSETINYRSHKPERGGLYAEEIFGPENDYE
CTCGKYRGKKYEGITCDKCGVLVTDSAVRRVNMGHIRLASPVVHFWYLKGVASPLSRLLG
IKRRDLRRIAYYETETSREDLFVVTLSGSPKVRQGETLYGTEVRILATAFTFQVEQAYLI
TKGARVVAEEAGEVRIEARKLANGETFRAVVIGRHEYPMAADAEVFVEDGDTVEAGEALC
ERPTGELCSQTMFEMLRARYEGVEGTPIQEVVDNLAHLVVRVDENVPLRLGQELSSLEVR
AYERCFPGGFEAATGAEGIERLLGVLDLDALADELWEELDRTVNQGERRRILHRLEVVDQ
LRRSGNNPQDLVLDVIPVLPPALRPMIQLEGGKFATTDLNDLYRRIINRNNRLKKLREMG
APEIILRNERRMLQEAVDALIHNEKKDNPIRGRDNRPLKSLSERIQGKQGRLRRHLLGRR
VDYSGRAVIVVNPALKIHQCGIPKKMALELFKPFILSRLEDLPYADYDEIKNKALAGELP
EVWDALDQLIREYPVLLNRAPTLHRLSIQAFQPVLVDGDAIQVHPHVCPSYNADFDGDQM
AVHLPLGKEAVQEAWELMLSARNTLSPAHGRPLALPTQDQVYGFYYLTILDPDGRGRGKA
FRSLDEAVKAYNHDVISLHAPIRIRLGDEIVETTLGRAILNEALPAELRDYTLTFDVRQV
RRKLEECYLRYGWQRAAEVLDELKSIGFRYATLSGLTISIPDCAIPPEKARLVQAAQAQV
DHINRMYARGLATEEQRYYAVTRVWRETVDAVEKATMANLSRMPFNPVYAIVSSGARGSA
GQVKQIAGMRGPMADPQGKVLEWPVISNFREGLSILEYFISTHGGRKGTADTALRTASAG
YLTRRLVDACVDAIVKERDCGTQHGVEVDPLYFAPKGQVMEDIPDRIYGRVTAEPIRDPA
TGQTLVEAQTLLDDRALAHRVGTLEVDLDLRTEGLEERTGSCKVVGEVHHPETGALLLRD
GEVLSPDHRDELLAAGIHTVRVRPKIVIRSPALCQTPGGLCQMCYGLDLAFHQLVKRGTT
VGVIAAQSIGEPGTQLTMRTFHTGGVAGVDITQGLPRAEELFEARKTTKAAHATVAPLSG
RITGIETTRSGREVVEITSEPHAVILPRAFVDVGEGEEVDGAKFRSLRSPIEGRAFFFDD
GEERYLAVLDEEGLDRMYTVPPEAEVQVKHGQRVAEGDPLTTEYHVEAPLAAIAGRVELH
QEGGARKIIVRGERGETREYEVPYGSQVLVTDGAEVEEGTKLATRSRPLAVRAEVAGRVL
AGQRSVAVLTPKSRALIAPITPELVPMVEHGAPVREGQELFQVSLPPGETLLVDRIETAE
DRATVRFRYRTQVECGEGTIVRVGDKVERGEPVSKGVIPPHYLMEVAGVQKTREYLLVEL
QKVYKSQGVDINDKHFEVVIRQILNNVRIVDPGESSFLLNDVVPLEIFQLEVRRLTEENE
RIRRGRDDLVGAKLLAPLARGGATIAEMGETVSREVLDRAVTLGVRQARVEIHGEPRTVR
LIEYRIPQGERELLRISRAALLRKSWLAAASFERTTKVLADAALRGEEDPLDGLKPCLMV
GKRIPVGTGFPADDDGSGPQS
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
gtggtcatatccggggacgacattgaacggatcaagcttggactagcatcgagcgatgag
atgctgtcgtggtcgaggggggaggtgacgaactccgagaccatcaactaccgaagtcac
aagccggagcggggcggcctctacgcagaggagatcttcggcccggagaatgactacgag
tgcacctgtggcaagtaccgcgggaagaagtacgagggcatcacctgtgacaagtgcggg
gtcctcgtcaccgactcggcggtgcggcgggtgaacatggggcacatccgcctcgcgagc
cctgtcgtccacttctggtacctcaagggggtggcgagccctctgtcccggctcctgggg
atcaagcggcgcgacctgcgccgcatcgcctactacgagacggagacatcgcgtgaggac
ctgttcgtcgtcacgctgtcgggttcaccgaaggtccggcagggcgagaccctatacggc
acggaggttcgcatcctggcgaccgcgttcacgtttcaggtggagcaagcctacctgatc
acgaagggggcgcgggtggtggcggaggaagcgggtgaggtgcggatcgaagcgcggaag
ttggccaacggcgagacgttccgcgcggtcgtgatcggccgtcacgagtacccgatggcc
gctgacgccgaggtgtttgtcgaggacggcgacactgtcgaggcgggagaggccctgtgc
gaacggccaacaggcgaactgtgttcccagacgatgttcgagatgctacgcgcgcgctac
gagggagtggagggaacgccgatccaggaagtggtggacaacctcgcccacctcgtcgtg
cgggtcgacgagaacgtcccgttgcgtctggggcaagagctgtcgtcgctcgaggtgcgg
gcgtacgagcggtgcttccccggtgggttcgaagcggcgactggtgctgaaggcatcgaa
cggctgctcggggttctggatctggatgcgctggctgacgagctgtgggaagaactcgat
cggaccgtcaaccaaggagagcggcgtcggatcttgcaccggctcgaagtggtggaccaa
ctacgtcggtcgggcaacaacccccaagacctggtgctggacgtcattccagtgctcccc
cctgcactgcgcccgatgatccagctcgagggtggaaagttcgcgaccacagacctgaac
gacctgtatcggcgcatcatcaaccggaacaaccggttgaagaaactccgtgagatgggg
gctcccgagatcatcctccgcaacgagcggcggatgttgcaggaggcggtggatgccctc
atccacaacgagaagaaggacaacccgatccgcggtcgggacaaccggcccctcaagtcg
ttgtccgagcgcattcagggcaagcaagggcggttgcgtcgccacctcctcggacgccgt
gtggactactcgggtcgagcggtgatcgtggtcaaccccgcgctcaagatccaccagtgc
gggattccgaagaagatggcgctggagctgttcaagcccttcatcctgtcgcgtctggaa
gacctcccgtatgctgactacgacgagatcaagaacaaggcgttggccggcgagctgccg
gaggtgtgggacgccctcgatcagctcatccgggagtaccccgtgcttctcaatcgagcg
ccgacgcttcatcggttgtcgattcaggcgttccagccggtgcttgtggacggcgacgcc
attcaggtccatccccatgtctgtccgtcctacaacgcggacttcgacggcgaccagatg
gcagtgcacctgccgctgggcaaggaggcggtccaggaagcgtgggagctgatgctctcc
gcccggaacaccctgtcccccgcccatgggcggccgctggccctcccaacgcaggatcag
gtgtacgggttctactacctcacgatcctcgaccccgacggccgtggccggggcaaggcg
ttccggtcgctcgacgaggctgtcaaggcgtacaaccatgacgtgataagccttcacgcc
ccgatccggatccgtctcggcgacgagatcgtggagacgacgctgggacgcgcgatcctg
aacgaagcccttccggcagagcttcgggactacacgctgacctttgacgtccggcaggtg
cggcgcaagctcgaggagtgctacctccggtacggctggcaacgggcggcggaggtcctc
gacgagctgaagtcgattgggtttcggtacgcaaccttgtcgggtctgacgatctctatc
cccgactgtgcgatcccgccggagaaggcacgactggtgcaggcggctcaggcgcaggtc
gatcacatcaaccgcatgtacgcgcgcggcttggccacggaggagcagcggtactacgcg
gtgacgcgggtgtggcgggagacggtggacgcggtcgagaaggcgaccatggcgaaccta
tcccggatgccgttcaaccctgtctacgccatcgtgtcgtcgggggcgcgtggttcggcg
ggccaggtgaagcagatcgcgggaatgcgtgggccgatggcggatccgcaggggaaggtt
ctcgagtggccggtgatctcgaacttccgcgaggggctgtccattcttgagtacttcatc
tccacccacggcgggcggaaggggacggcggataccgcgttgcgcacggcgagcgccggc
tacctcacgcgcaggctcgtggatgcctgtgtggacgccatcgtcaaggagcgcgactgc
gggacccagcacggggtggaggtggatccgctgtacttcgccccgaagggacaggtgatg
gaggacatccccgaccggatctacggccgggtgactgcagagccgatccgcgaccccgcc
acggggcagacgctcgtcgaagcgcagacgcttctcgacgatcgggcgctggcccaccgc
gtgggaacccttgaggtcgatcttgacctgcgcacggagggcctggaggagcggacgggc
tcatgcaaggtggtcggtgaggtgcaccacccggagaccggtgcgcttctgctgcgcgat
ggggaagtgctgtcgccagaccaccgcgatgagctgctggcggcggggatccacacggtg
cgggtacgtcccaagatcgtgatccgttctccggcgttgtgtcagacccccggtgggttg
tgccagatgtgctacgggttggacctcgcgtttcaccagttggtcaagcggggcaccacc
gtgggggtcattgccgcgcagtcgatcggcgagcccggcacccagctcaccatgagaacc
ttccacacgggtggtgtcgctggcgtggacatcacgcaaggcctgccccgtgccgaggag
ctcttcgaggcgcgcaagaccaccaaggcggcccacgccacggtggcccccctgtcgggc
cggatcacgggcatcgagacgacccgttcaggacgcgaggtggtcgagatcacctcggaa
ccccacgcggtgatcttgccgcgggcgttcgttgacgtcggcgaaggagaagaggttgac
ggggccaagttccgctcgctgcgcagcccgatcgaaggccgggcgttcttcttcgacgac
ggggaggagcgatacctggcggtgctcgacgaggaagggctggaccgaatgtacaccgtg
ccgcccgaggcggaggtccaggtgaagcatggtcagagagtggcggagggcgatccgctc
accacggagtaccacgtcgaggcaccgctggctgcgattgcgggccgggtcgagctgcac
caggagggtggtgcgcggaagatcatcgtccgcggggagcgcggcgagactcgggagtac
gaggtcccctatggatcccaggttctcgtcacagatggcgcggaggttgaggaagggacc
aaactcgccactcggtcccgccccctggccgtgcgggccgaagtggcggggcgggtgctc
gcgggccagcgttcagtagcggtgttgacgcccaagagccgtgcgctgatcgcccccatc
acgccggagcttgtgccgatggtggagcacggtgccccggtgcgcgaggggcaagagctg
ttccaggtcagccttcctccgggcgagaccttgctcgtagaccgaatcgagacggcggag
gaccgggcaactgtgcggttccgatatcgaacccaagttgagtgcggcgaagggacgatc
gtgcgcgttggcgataaggttgagcgtggcgagccggtgtccaagggtgtgatccctcct
cactacttgatggaggtggccggcgtgcagaagacccgggagtacctccttgtggaactg
cagaaggtgtacaagtcgcagggcgttgacatcaacgacaagcacttcgaggttgtgatc
cgccagattctgaacaacgtacggatcgtggatcccggtgagtcgtcgttcctcctgaac
gacgtggttccgctggagatcttccagctcgaggtccggcggcttaccgaggagaacgaa
cggattcgccgtggccgcgatgacctggtcggggcaaagctgcttgccccgcttgcccgc
gggggcgcgacgatcgccgagatgggggagaccgtcagccgtgaggtgttggatcgtgcg
gtcacactgggggttcggcaggcgcgggtcgagatccacggcgagccccggacggtgcgc
ctgatcgagtaccggattccccagggtgagcgcgagctgctgcgcatctcgcgggcggcc
ttgttgcggaagtcgtggctggcggcggcgtcgtttgagcgaacgacgaaggtgctggcc
gacgcagcactgcgtggcgaggaggacccgctggacgggctcaaaccgtgcctgatggtc
gggaagcggatccctgtcggcacgggattccccgctgacgatgacggttctggtccgcag
agttga
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