Candidatus Bipolaricaulis sibiricus: BIP78_0862
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Entry
BIP78_0862 CDS
T05809
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bih
Candidatus Bipolaricaulis sibiricus
Pathway
bih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BIP78_0862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bih03021
]
BIP78_0862
03019 Messenger RNA biogenesis [BR:
bih03019
]
BIP78_0862
Transcription machinery [BR:
bih03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BIP78_0862
Messenger RNA biogenesis [BR:
bih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BIP78_0862
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Spore_III_AA
ATPase_2
OB_RNB
S1CSD-TOTE-2
AAA_22
NACHT
AAA_24
Motif
Other DBs
NCBI-ProteinID:
QAA76628
UniProt:
A0A410FUL0
LinkDB
All DBs
Position
859055..860302
Genome browser
AA seq
415 aa
AA seq
DB search
MEMSEVRGLGLEKLTGLAQTLGVNGSGDLSSVELELAVMRVLAERQELAVEGILEIMPDG
YGFLRERSCLPSRYDVYVSPSQIKRFALKDGDLIRGPVRQPREGERYFALLKVDQVSGLD
PEQVRKRVDFQQLTPLHPNQHLVLEHNPDEPSTRMIDLFAPIGKGQRGLIVSPPKAGKTT
LLKHIAQGIEANHPDVRLLILLVDERPEEVTDFRRSVKRAEVIAATFDMEPQHHTRIAEL
ATAEGKRLVESGYDVVILMDSLTRLGRAYNLSISPSGKLLSGGIDPTALYKPKEFFGAAR
NIEEGGSLTIIATALIDTGSRLDQVVFEEFKGTGNMELVLNRDLANRRVFPAIDLVQSGT
RKEELLLQPDVLRRVWILRKLLIEMPDPGAALEFIKGKMEQTRTNKQFLELMNSE
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgagcgaagtccgcggcctggggttggagaagctgacgggactggctcaaacc
ctcggggtcaacggaagcggcgacctgtcgtcggtcgagctcgagctggcggtgatgcga
gtcctggctgagcggcaggagctggctgtggaagggatcctcgagatcatgcccgatggc
tacgggttcctgcgcgagcggtcgtgccttcccagccggtacgacgtctacgtgtcccca
tcgcagatcaagcggttcgccctcaaggacggcgacctcatccgtgggccggtgcgccag
cctcgggaaggcgagcggtactttgcccttctgaaggtcgaccaggtcagcgggcttgac
ccggagcaggtccgaaagcgggtcgatttccagcagctgacgcctcttcaccccaatcag
catctcgtcctcgaacacaaccctgacgagccctccacgcggatgatcgacctcttcgct
ccgatcgggaaggggcagcgcggcctcatcgtctccccgcccaaggcggggaagacgacc
ctcctcaagcacatcgcccaggggatcgaggccaaccacccggatgtccgcctgctgatc
ctgctcgtcgacgagcggccggaggaggtgaccgacttccggcgctcggtgaagagagcc
gaggtcatcgccgcgacgttcgacatggaaccccagcatcacactcggattgccgagctg
gccaccgcggaggggaagcgcctcgtcgaatcgggctacgacgtcgtcatcctcatggac
tccctcacccggctcgggcgggcgtataacctctccatcagcccgtcgggcaagctcctc
tcgggcggaatcgaccccactgccctctacaagcccaaggagttctttggggcggcgcgg
aacatcgaggagggcggatcgctgaccatcatcgccacggctctcatcgataccgggtca
cgcctcgaccaagtggtgttcgaggagttcaagggcaccggcaacatggagcttgttctg
aaccgcgatctcgccaatcggcgggtgttcccggccattgaccttgtgcagtcgggcaca
agaaaagaggaactcctccttcagccagatgtccttcgccgggtgtggatcctccgtaag
ctcttgatcgagatgcccgaccccggcgcggcgctggagttcatcaaaggcaagatggag
cagacgaggacgaataagcagttcttggagctgatgaacagtgagtga
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