Candidatus Bipolaricaulis sibiricus: BIP78_0939
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Entry
BIP78_0939 CDS
T05809
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bih
Candidatus Bipolaricaulis sibiricus
Brite
KEGG Orthology (KO) [BR:
bih00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BIP78_0939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bih03021
]
BIP78_0939
Transcription machinery [BR:
bih03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BIP78_0939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_2
Sigma70_r4_2
HTH_15
HTH_31
Motif
Other DBs
NCBI-ProteinID:
QAA76705
UniProt:
A0A410FUA5
LinkDB
All DBs
Position
940812..941873
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AA seq
353 aa
AA seq
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MPDEIDIVPPEVREPGAAAEEEELSDLIPLIAELADSEPEEEPAERGRDPVRTYLREIGR
VPLLTREEEAELAQKVEAGTAALEELNQGVVDPQRKAELEKVIQEGDAARERLAVSNLRL
VVSIAKRYMHRGLSFLDLIQEGNIGLMRAVEKFDWRKGYKFSTYATWWIRQAITRAIGDQ
ARTIRVPVHTMEAVQELGRLRREYIREHGAAPTYEQLAELLGTSVDRVKKIEQAAAFTTS
LERPLSDDDDDTLGDFIADVSAQSPVREALRARLRDELRDALTELDPREREILELRYGLI
DGHPRTLKEVASQFEITRERVRQLELKALEKLKYPARHRSLRSLRELLLSEEE
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgacgaaatcgacatcgttcctcccgaggtgcgtgagccgggagcggcggccgag
gaagaggagctaagcgatctgatcccactgattgccgagctggccgattccgagcctgag
gaggagccggccgagcgtggccgtgacccggtccgcacctatctccgcgagatcgggaga
gttccgcttctcacacgggaagaggaggccgagcttgcccagaaggtcgaagccggaaca
gcagcgctggaagagctcaaccagggggtcgtggatccacaacgcaaagcggaactcgag
aaggtcattcaggaaggggacgcggcgcgggagcggcttgcggtgtccaaccttcggctc
gtcgtgtcgatcgcgaagcgctacatgcaccgtgggctctccttcctcgacctcattcag
gaaggcaacatcggcctcatgcgggcggtggagaagttcgactggcgcaagggatacaag
ttctcgacctacgccacgtggtggatccgccaggcgatcacccgtgccatcggcgaccag
gcccgaacgatccgggtcccggttcacacgatggaggcggtgcaggagctgggccgcttg
cgacgggagtacatccgcgaacacggcgcggcccccacctacgagcagctggcagagctt
ctcggaacgagtgtggatcgggtaaagaagatcgagcaggcggcggcattcacgacatcg
ctcgaacgcccgctgtcggacgatgacgatgacactctgggcgacttcatcgctgacgtg
tcggcccagtccccggtgcgggaggcactgcgcgcccggctccgagacgaacttcgcgat
gccctgaccgaactcgatccccgcgagcgggagatcctcgagctgcgctacgggctgatc
gacggtcatccccggacgttgaaggaggtggcgagccagttcgagatcacccgcgagcgg
gtgcgccagctcgagctgaaggccctcgagaagctgaagtacccggcccggcaccggtcg
ttgcgctccctgcgcgagctcctcctgtccgaggaggaatga
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