Bifidobacterium indicum: BINDI_0373
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Entry
BINDI_0373 CDS
T03564
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bii
Bifidobacterium indicum
Pathway
bii03030
DNA replication
bii03430
Mismatch repair
bii03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BINDI_0373
03430 Mismatch repair
BINDI_0373
03440 Homologous recombination
BINDI_0373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bii03032
]
BINDI_0373
03400 DNA repair and recombination proteins [BR:
bii03400
]
BINDI_0373
Enzymes [BR:
bii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BINDI_0373
DNA replication proteins [BR:
bii03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BINDI_0373
DNA repair and recombination proteins [BR:
bii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BINDI_0373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
DUF5487
Motif
Other DBs
NCBI-ProteinID:
AIC91655
UniProt:
A0A087VTD6
LinkDB
All DBs
Position
555534..559094
Genome browser
AA seq
1186 aa
AA seq
DB search
MSSSQSNFVHLHTHTHYSTLDGASKIPDLVSEVKAQGQPAVAITDHGNMHGAYEMWRTAV
DAGVKPIIGIEAYVTPETARQDKTRVRWGTEEQRSDDVSGGGFITHMTLWASDDEGLVNL
IKASSLANLEGLVGKWPRMDKDLLSTYHKGVIATTGCPSGIVQTRLRLGQFDEALRAAGE
FQDIFGKENYYIELMDHGLDIERRVTKDLLEIAKRLDAPLVATNDSHYVREEDASAQDAL
LCINSGSRLTDPGRFKFDGSGYYIRSSEEMRQIFKEFPEACDNTLEIAERCNIMFDDHED
GAFMPRFDCPEGWDETSLFLKKVDEGLKNRYPDGVPEEVSHQADYECGVICQMQFTGYFL
VVSDYINWAKQHGIMVGPGRGSAAGSMVAYAMGITELDPLKHGLIFERFLNPERVSLPDI
DVDFDPEGRAKVLEYVGEKYGSDKVAQCVTYGTIKTKQALKDSARIMDYEYSMGDQVTKA
LPPSANGKDMSLKEIFDPGSKRFPEAKEFRDLYDSNPDVKRITEEAKGIEGIIRQTGVHA
CATIMASNPITDTSPLMERNDGTVTTTFEYHTCETLGLVKMDFLGLSNLTVIRDSITNIE
RNGKEPISIEKVPLDDKETYELLSRGDTLGVFQLDGDGMRSLLRMLKPDNFNDISALIAL
YRPGPMDMNSHINYAKRKNGQQKIEPIHPEVAEPLKAVLDETYGLIVYQEQVQSAARILA
GYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKEHGYSREAAQAVWDVLVPFSGYAFNK
AHSAAYALIAYWTAYLKTHYPVEFMAALLENERTNKDKTALYLGEARRMGIQILPPDINE
SVAAYSAVGDVVRFGLAAIRNVGSKAVQAIIDERSGPRGRFVNFMDFVKRVPMDVLNKRT
VESLIKGGAFDGIDPNRRALFQVHDEAIDQVMPIKRKQAEGQFDLFAEADDDGGNESDAL
GDAQVTIPDIEEWEKSTKLNFERQMLGLYVSDHPLSGMTSVLAGMRDMSIAQLLNRANTM
GNQTVTLAGLVTAVDRRVSKKGNPWAIVTIEDLESSIQCMFFGKVYDANADDLSLDSVIR
VRGLVELRDEESSLRVTDMEVPMLESADERPLTITLPRTALDRGRMERLAQILKTHPGYC
QVRLAVTDERGNVRMLTFGDGFRTTHDTSMLAEIKSVFGPSCLPSA
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcttcccagtcgaacttcgttcacctgcacacccacacccattactccactctg
gacggggcctcgaagatccccgacctggtctctgaggtcaaggcgcagggccagccggca
gtggccatcacggaccatggcaatatgcacggtgcctacgagatgtggcggaccgccgtg
gacgcgggtgtcaagcccatcatcggcatcgaagcctacgtgacccccgaaacggcccgg
caggacaagaccagggttcgttggggcaccgaggagcagcgttcggatgatgtctccggt
ggtggtttcatcacccacatgaccctctgggccagtgatgacgagggtctggtcaacctg
atcaaggcctcctcactagccaatctggagggtctggtgggcaagtggccacgaatggac
aaggacctcctttccacctaccacaagggcgtcatagcaacaaccggttgcccgtcgggc
atcgttcagaccaggctgcgtctggggcagttcgacgaggccctccgggctgccggggag
ttccaggacatattcggcaaggagaactactacatcgagttgatggaccacgggctggat
atcgagcgccgcgtgaccaaggatcttctggagatcgccaagcggttggatgcccctctg
gtggccaccaacgactcccattatgtgagggaagaggatgcctcggcacaggatgccctg
ctctgcatcaactccggttcgcgccttacggaccccggtcgattcaagttcgacggttcc
ggctactacatccgttcgtccgaggagatgcggcagatattcaaggagttccctgaagcc
tgcgacaacactcttgagatcgccgagcgctgcaacatcatgttcgacgaccatgaggac
ggggccttcatgccccgcttcgactgcccggagggatgggatgagacctccctcttcctg
aagaaggtcgatgagggactgaagaaccgctatccggacggggtgcccgaagaggtgtcc
catcaggccgactacgagtgcggtgtgatttgccagatgcagttcactggctacttcctg
gtggtctccgactacatcaactgggccaagcagcatggcatcatggtgggtccgggccgt
ggttccgcagcaggttccatggtggcctacgccatgggcatcaccgagttggaccctctg
aagcacggactgatcttcgagcgtttcctcaaccccgagcgtgtgtccctgcctgatatc
gatgtggatttcgaccccgaaggcagggccaaggtcctggagtatgtgggcgagaagtac
gggtccgacaaggtcgcccagtgcgtgacctacggcaccatcaagaccaagcaggccctg
aaggactctgccaggatcatggactacgagtactccatgggtgaccaggtgaccaaggcc
ctgcctccctccgccaacggcaaggacatgagcctcaaggagatattcgatcccggttcc
aagcggttccccgaggccaaggagttccgtgacctctacgattccaatccggacgtgaaa
cgaatcactgaggaggccaagggcatcgaggggatcatacgccagaccggtgtgcacgcc
tgcgccaccatcatggcatccaaccccatcaccgacacctcccccctgatggagcgcaac
gacggcacggtcacgaccaccttcgagtaccacacctgcgagaccctcggactggtcaag
atggacttcctggggctttccaaccttaccgtcatcagggattccataaccaacatcgag
cgcaacgggaaggagccaatcagcatcgagaaggttcccctggacgacaaggaaacctat
gaactcctatccaggggtgataccctgggcgttttccagctcgatggtgacgggatgagg
tccctcctgaggatgctcaagcccgataacttcaacgacatatccgccctgatcgccctg
taccggccggggcccatggatatgaactcccacatcaactacgccaagcgcaagaacggc
cagcaaaagatagaacccatccatcccgaggtggccgaacccctcaaggcggtcctggac
gagacctacggtctgatcgtctatcaggagcaggttcagtcggccgcgcgaatcctggcc
ggatactccctgggcaaggctgatgtgctccgtcgagccatgggcaagaagaagcccgag
gtcctggccaaggagcaggtgcccttcttcgagggcatgaaggagcacggatactcccgg
gaggccgcccaggccgtctgggacgttctggtccccttctccgggtacgccttcaacaag
gcccactccgccgcctacgccctgatcgcatactggaccgcctacctgaagacccactat
ccggtggagttcatggcggccctcctggagaacgaacggaccaacaaggacaagacggcc
ctctatctgggcgaggcacggcgtatggggatccagatcctgcctccggacatcaacgag
tccgtggccgcttattccgcagtcggcgacgtggtccgcttcggtctggcggccatccgc
aacgtgggttccaaggcggtccaggcgatcatcgacgagcggtcaggtccccggggcagg
ttcgtcaacttcatggacttcgtcaagcgggtgcccatggacgtcctcaacaagcgcact
gtggaatccctgatcaagggtggtgccttcgacgggatcgaccccaacaggcgggccctc
ttccaggtgcatgacgaagccatcgaccaggtcatgcctatcaagcgcaagcaggccgag
gggcagttcgacctcttcgcggaggccgatgacgacggggggaacgagtcggatgccctc
ggtgatgcccaggtgaccattcccgacatcgaggagtgggagaagtccaccaagctcaac
ttcgaacgccagatgctgggcctctatgtatccgaccacccgctgagcggtatgacctcg
gttctggcgggtatgcgcgatatgtcgatcgcccagctgctgaaccgggcgaacaccatg
ggcaaccagaccgtcaccctggcaggactggtcacggccgtcgacaggagggtctccaag
aaggggaacccctgggccattgtcaccatcgaggatttggaatcctccatacagtgcatg
ttcttcgggaaggtatacgacgccaatgccgacgacctctccctggactcggtgatccgg
gtgcggggactggtggagttgcgtgatgaggaatccagcctgcgggtcaccgacatggag
gtgcccatgctggagtcggccgatgaacggcctctgaccatcaccctgcccaggacggcc
ctggaccgcgggcgaatggagcggctggcgcagattctgaagacccatccagggtactgc
caggtcaggctggctgtgaccgatgagcgggggaacgtgcgcatgctgaccttcggggac
ggcttcaggaccacccacgacacctcgatgctggctgagatcaaatcggtcttcgggccc
tcctgccttccctcggcctag
DBGET
integrated database retrieval system
