Bifidobacterium indicum: BINDI_0383
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Entry
BINDI_0383 CDS
T03564
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bii
Bifidobacterium indicum
Brite
KEGG Orthology (KO) [BR:
bii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bii03019
]
BINDI_0383
Enzymes [BR:
bii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BINDI_0383
Messenger RNA biogenesis [BR:
bii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BINDI_0383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
AAA_19
AAA_22
AAA_30
SLFN-g3_helicase
HA2_C
nSTAND3
T2SSE
HA2_N
Zeta_toxin
AAA_11
Cas3-like_C_2
NACHT
SRP54
TsaE
ResIII
AAA_16
Leg1
Motif
Other DBs
NCBI-ProteinID:
AIC91664
UniProt:
A0A087VTK6
LinkDB
All DBs
Position
complement(567064..571254)
Genome browser
AA seq
1396 aa
AA seq
DB search
MRFQYPVELPVSAAKDDIAQAVRTSQVVIVSGQTGSGKTTQIPKILLEMGRGTHGHQIVH
TQPRRIAARTVAERIASETGVRLGEEIGYQVRFTDQSSKRTRLRVVTDGILLAQIQGDPQ
LRAYDTIIIDEAHERSLNIDFLLGYLTALLPKRRDLKLIITSATIDSVKFRDHFAKALHT
QVPVIEVSGRTYPVQTLYEPAGSPPALMRAVPGFSSGGFLQEGDGDQDDLDVPTAVARAC
AELVIHSTHVNGPRDILVFAAGERDIREYETALRRHFGPRASDMQRTDAIELVPLFARLS
AKEQHRVFEQHNHQRIVIATNVAETSLTVPGIRYVVDPGMARISRYSKSAKVQRLPIEPI
SQASADQRAGRCGRVADGIAIRLYSKDDYDTRPRFTDPEILRTSLGAVVLHMLSVGVAKT
AEDVTGFGFIDPPDTRAVTDGFNELTELQAVARTRGEVRLTPLGRKLARIPIDIRLGRMV
LQAGQDTTPDTLAAVLVVVAFLSLQDPRERPEEKREEADRLHARYDDPTSDFLTALNIWH
RFFPEVKQSSNSALRKACKQEFISFMRMRQWHDLYQQLVQMCQGMHMQVGNPKPIKAPDK
GILNLPQAQQAAHSLVCSWDDQGIHRSMLSGLLSSIGMQVIHEPKASDFTGLKGAARAKA
MKRAQKRSKNEYQGARGTHFAIFPGSAVSKSTPAWIMSAELVETSRLWARYCAAIDPAWA
EPLARSLTRTTYAEPHWSASRGAAVASSKVLLYGLPIVQDKTIQWGSINPTQAREFLVRQ
GLVEGDIRQRFPHDDFIRTNRDILREADDQTSRTRQVADTINETDLADFYFERLPHEATS
VAALGNWWRHNHDQDPHLLDFDPGKVERLSRNEEGYRPGDYPNHWHTLGRDGNELDLPLT
YVYNPSDPNDGVTIHIPVGTLSQLNPQEFTWNVPGLLDDLIVSTIKSLPKTLRVQFVPAP
DTARAIRRWIDGHYATLPGSDYSGAGQEPVYGSSTASGSGTNGRGKAVDQESTVGTWPDF
THVFTAAAIDVVGAQIHPEVFDQAQLDRLPPYLRMTFQVEEEPSRHRKHGRVRKGRSDPV
ASGQDRPGADRPSAGQPAPEQPKVLGQSKSLSELQSRLAGLARESARTVVGNRASQAAKE
GKAVRRADLLHKAGATTESRKDMIWQAALEKLELPSQRISSRWLSRESLMLASAPYRNTD
ALTRDLQLAAVKRLIPETEAITDDQTLQETVSGLGQVFEDTVYQVAKDAIAILQRYAEVD
KAVSGPADLPLLSVLQWIRQHASTLVQKGFIGVDPPYALPRLQTYLHADLMRLEKARRDK
DRDVRWAWQAQTAQDKVDKARKTASALPNGPARDAAMDRIQRARWMLEEYYVSIWAQELG
TATPVSLQRIEKVLEA
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgaggttccaataccctgtggagctgccggtcagtgcagccaaggacgacatagcgcag
gccgtcagaacctcgcaggtggtcatcgtctcggggcagaccgggtcgggcaagaccacc
cagatacccaaaatcctcctggaaatggggaggggaacccacggccaccagatagtccac
acccagcccaggcgcatagccgccaggacggtggcggagcgaatcgcatccgagacaggg
gtgcggttgggtgaggaaatcggttaccaggtcaggttcaccgaccagtcctccaaacgc
acccgtctgcgggtggtaacagacggcatcctgttagcccagatacagggtgatccccag
ctgcgggcctacgacacgatcattatcgacgaggcccatgaacgcagtctgaacatcgac
tttcttctggggtacctgacggctctactgcccaaacgccgtgatctgaaattgatcatc
acttcggccaccatcgactcggtcaagttccgagaccacttcgccaaggccctccatacg
caggtcccggtcattgaggtctcaggccgcacctacccggtccagaccctttacgaaccc
gccggatccccacccgcccttatgcgggcggtgcccggtttctcttccggaggattcctc
caggaaggtgacggggaccaggatgacctggacgtacccaccgccgttgccagagcatgt
gccgaactggtcatccattccacgcatgtgaacggtccacgtgacatcctggtctttgcg
gccggcgagcgcgacatccgcgagtacgagaccgcactgaggcgccacttcggccccagg
gcttcggatatgcagcgcaccgatgccatagagctggttcccctcttcgccaggctttcg
gccaaggagcagcaccgggtcttcgaacagcacaaccaccagcgcatcgtcatcgccacg
aatgtggccgaaacctccctgaccgtacccggcatccgctatgtggtggacccgggcatg
gccaggatcagcaggtattccaagtcggccaaagtgcaacggcttcccatcgaacccatt
tcccaggcatccgccgaccagcgggccgggcgctgtggacgcgtggccgatggcattgcc
atccgcctgtacagcaaagacgactacgatacacgacccagattcacggatccggagatt
ctgcgcacttctctgggggcggtggttctccatatgctctcggtaggcgtggcaaagacc
gccgaggatgtaaccggtttcgggttcatcgacccaccggacacaagggcggtcaccgac
ggcttcaacgaactgaccgaactccaggctgtggcccggacccggggcgaggtcagactg
acccccttgggcaggaaactggcccggatccccatcgacatccgcctgggcaggatggtt
ctccaggcgggccaggacaccacgcccgacaccctggcggcggttctggtggtcgtcgcc
ttcctctccctccaggatccccgcgagcgccccgaggagaaacgggaggaagccgatcgc
ctccatgctcggtatgacgacccgacgagcgacttcctgaccgccctgaatatctggcac
cgcttcttcccggaggtgaagcagtcctccaactcggccctgcgcaaggcttgcaagcag
gagttcatcagcttcatgcggatgcggcagtggcacgacctctaccagcaactggtacag
atgtgccagggaatgcacatgcaggtggggaaccctaagcccatcaaggcaccggacaag
ggaatcctgaacctcccccaggcccaacaggccgcccactccctggtatgttcctgggac
gaccaggggatccaccgctccatgctctccggtctcctgtccagtatcggcatgcaggtc
atccatgaacccaaggcctcggacttcaccggcctcaaaggtgccgccagagccaaggcc
atgaaacgtgcccaaaaacgctccaagaacgagtaccagggcgccaggggcacccacttc
gccatcttccccggatcggccgtctccaagagcacccccgcctggatcatgtcggccgaa
ctggtggagacctcccggctctgggcccggtactgcgccgccatcgacccggcctgggcg
gaacccctggccaggtccctgacccggaccacctatgcggaaccccactggtcagcctca
cgcggtgcggccgtggcatcctccaaggtcctcctatatggcctccccatcgttcaggac
aagaccatccaatggggctccataaaccccacccaggcccgggagttcctggtgcgtcag
gggctggtcgaaggcgacatacggcagaggttcccccacgacgacttcatccggaccaat
cgtgacatcctccgggaggccgacgaccagaccagccgaacccgccaagtggccgacacc
atcaacgagaccgacctggccgacttctactttgaacgactcccccatgaggcaacctcc
gtggcagccctcggaaactggtggaggcacaaccacgaccaggatccgcaccttctggac
ttcgaccccggcaaggtggaacgactcagccggaatgaggagggataccggccaggcgac
tatcccaaccactggcataccctgggcagggacgggaacgaactggacctccccctgacc
tacgtctacaaccccagcgacccgaacgacggggtcacaatccacataccggtcggcacg
ctctcacaactgaacccacaagagttcacctggaacgtgcccggactcctggatgacctc
atcgtctcgaccatcaaatccctccccaagactcttcgtgtccagttcgttcccgcaccc
gacacggcccgggccatccgccggtggatcgacgggcactacgccaccctccccgggtcc
gattacagcggggcagggcaggaacccgtgtacgggtcgtccaccgcttccggatcaggc
acgaacgggagaggcaaggcagtcgaccaggaatcgacggttggaacctggcctgatttc
acccatgtcttcaccgccgccgccatcgatgtggtcggcgcgcagatccaccccgaggta
ttcgaccaggctcaactcgaccgattgcctccctacctgcgaatgaccttccaggtcgag
gaggaacccagtcgtcatcgcaagcatggtcgcgtcaggaagggccgctccgatccggtc
gcgtcaggccaggaccgtccgggtgccgataggccgagcgcagggcaaccagctccggaa
cagccgaaggtgctggggcaatccaaatccctgtccgagcttcagtcacgcctggccgga
cttgccagggagtccgcccggaccgtggtcggaaacagggcctcgcaggccgccaaggag
gggaaggcggtcaggcgcgccgacctgctccataaggcaggagccacaaccgagtcccgg
aaggacatgatatggcaggccgctctggagaagcttgagctcccctcccaacgcatatcc
tcccgctggttgagccgcgaatcactgatgctggcctcagccccctaccgcaatacggat
gccctgaccagggaccttcagttggcggccgtgaaacgcctgattcccgaaaccgaagcc
atcaccgatgaccagaccctacaggagacggtgtccgggctggggcaggtcttcgaagac
accgtctaccaggtggccaaggatgcgattgccatcctccaacgctacgcggaggtcgac
aaggccgtatcgggtcctgccgacctccccctcctttccgttctgcaatggatacggcag
catgcatcaaccctggtgcagaaagggttcatcggggttgatcctccctatgccttgccc
cgcctgcagacgtatctccatgccgacttgatgcgcctggagaaggcccgcagggacaag
gaccgggatgtgcgatgggcctggcaggcccagaccgcccaggacaaggtggacaaggca
cggaagacggcctcggcactccccaacggtcccgcccgtgatgcggccatggacaggatt
cagcgggccaggtggatgcttgaagagtactatgtctccatctgggcccaggagctgggt
acggccacgcctgtgagcctgcagcgtatcgagaaggtcttggaggcctga
DBGET
integrated database retrieval system
