Bifidobacterium indicum: BINDI_0518
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Entry
BINDI_0518 CDS
T03564
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bii
Bifidobacterium indicum
Brite
KEGG Orthology (KO) [BR:
bii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bii03016
]
BINDI_0518
Enzymes [BR:
bii01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BINDI_0518
Transfer RNA biogenesis [BR:
bii03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BINDI_0518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
AIC91798
UniProt:
A0A087VU29
LinkDB
All DBs
Position
739589..740938
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AA seq
449 aa
AA seq
DB search
MEDSARRQDMTGRQEERPGQGESDAEPARLLAEPRGGVPPVIDDAQGFARACRELSQERG
PLAADAERASGFRYGHDDYLVQFKRGSSDIFLLDPQALNRAGCDWDDFNRAVDGAQWIIH
DSPQDLPGFHDLGMKPSSLFDTELTARMLNLRHFGLSAVTEHFLGLSLAKEHSAADWSHR
PLPRDWRNYAALDVELLVPLRERMLLELERQGKEEWARQEFVWLLDKRSQRKPRPEQPWR
HLSQISTLRKDRRGLAVARALWTKREELGREYDIAPSLLLTDRSIIAAAQAKPRNAAQFR
AIRSLNERVRIHAGGEQDRMFERYAPIQRKVRPTVWRETILEALDLPADELPVGPKPQAD
QSNAPKSMQVWRQRHPERMARLEAARKTVARIGQETNTPVDVLIKPKYLRNLCWTDEPGK
RDVADFLEEQGARPWQVSLLSESLSRAIM
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggaggatagtgcccgtcggcaggacatgaccggtcgccaggaagagcgtccaggtcaa
ggagagtcagacgccgaaccagcccggttgctggccgaacccaggggtggtgtcccaccg
gtcatcgatgatgcgcaggggtttgcgcgggcatgccgtgaactctcccaggaacgcggc
cctctggctgccgatgccgagcgggcttcgggttttcgctatggacatgatgattacctg
gtccagttcaagcgcgggtcatcggatatcttccttctggatcctcaggcactgaaccgt
gcaggatgtgactgggacgatttcaaccgggccgttgatggtgcccagtggatcatccat
gactcacctcaggatcttcccggtttccacgacctgggcatgaagccctcatcgttgttc
gatacggagttgaccgcgcgaatgctgaacctccggcatttcggtctctctgcggtgacc
gagcacttccttggtctctccctggccaaggaacactccgccgccgactggtcgcaccgc
ccccttcccagggattggcgcaactacgccgccctggatgtggagcttctggttcccctg
cgtgagcgcatgctgctggagctggaaaggcagggcaaggaagaatgggcccggcaggaa
ttcgtctggctgctggacaagcggtcacagcgcaagcccagacccgagcaaccctggcgg
catttgtcgcagatcagcaccctccgcaaggaccgacgcggcctggctgttgcgagggcc
ctatggaccaagcgcgaggaactgggcagggagtatgacatcgctcccagccttctcctg
accgacaggtccatcatcgccgccgcccaggcgaaaccacgtaatgccgcccagttccgt
gccatccgctccttgaatgagcgggtgaggatccatgcgggtggggagcaggacaggatg
ttcgaacggtacgctcccattcagcgcaaggttcggccgacggtctggagggagaccatc
ttggaggcgctcgatctgcctgctgatgaactccccgtagggcctaaaccgcaggcggac
cagagcaacgcccccaagtccatgcaggtgtggcggcagcgccatccggagcgtatggcg
aggctcgaagcggctcggaagaccgtggccaggatagggcaggaaaccaataccccggtc
gatgttctgataaagcccaagtacctgcgtaacctctgctggaccgatgagcccggaaaa
agggacgtggccgacttcctcgaagagcagggcgccaggccctggcaggtttccctcctg
tcagagtccctaagtcgcgctatcatgtaa
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