Bifidobacterium indicum: BINDI_0716
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Entry
BINDI_0716 CDS
T03564
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bii
Bifidobacterium indicum
Pathway
bii03420
Nucleotide excision repair
bii03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BINDI_0716
03430 Mismatch repair
BINDI_0716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bii03400
]
BINDI_0716
Enzymes [BR:
bii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BINDI_0716
DNA repair and recombination proteins [BR:
bii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BINDI_0716
MMR (mismatch excision repair)
Other MMR factors
BINDI_0716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
CarD_TRCF_RID
Motif
Other DBs
NCBI-ProteinID:
AIC91989
UniProt:
A0A087VUJ6
LinkDB
All DBs
Position
complement(963570..966221)
Genome browser
AA seq
883 aa
AA seq
DB search
MSEEPDMIQRSAGDLLNGLNDRQAEAVQYRGPALLIGAGAGSGKTRVLTRRIAWILSQFG
AWPSQVLAITFTNKAAAEMRERLGGLIGPVAERMWVSTFHSACVRILRRDGKAIGLRSGF
SIYDTADCERLIKLIGQDLNIDLKRYTPRNILSHISDYKNNLQGWQTQLAEYAPDYKPGE
KGQQIVARFGNEEELYSVVYAEYQHRLAMANAVDFDDLIVRTVELLQKAPMVAQYYHRRF
RYILVDEYQDTNHAQYVLMRELAGVGQGRETHEDVQHMNGFGAPGAPGANTAAIPLGAGR
EGPAWITVVGDSDQSIYAFRGADISNIRDFEKDFPGARTILLEQNYRSTQTILDAANAII
VKNEGRKPKKLWTALGKGEPIVGYAADNAQQEAAWIATEIARLRNEEGIHYSDMAIMYRA
NAQSRALEEALINAGLPYQLVGGTKFYERREIKDALAYLHAIANPEDDVNMRRILNVPKR
GLGARAEAAAATYADLHGTSFWTGVEHLDEVEGISTLTSKRMATFRDLIRSLTAFAAEHD
SKPSEIVAEVLDESGLLDELNKSTDPQDASRVENLSQLQSVAAEFEQKTPDASLAGFLET
TALVADSDQLPGIGDDSGKVTLMTLHTAKGLEYPVVFLTGMEQGTFPHSRSLEDATELQE
ERRLAYVGVTRAKQRLYLTRSAVRAQWGQSNEMLPSQFLDDIPESLLDWKRKEAGFERMH
SGWGFGDDDDEFGGFEDEGDGASFGGRAFGGSGTESRSGSSWSRGSSRSGGSSRSSYGSR
GYGSQRGGGSWSSGSRRNGRITTRRSGQGSGLKSKPAAAPAEPRSNGLSIQDFSIGDRVA
HDQYGLGKVVDVQDKGHNSVLTVDFGSEGTKRLMLRLAPIEKL
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgaagaaccggacatgatccagcgcagtgcaggggacctgctcaacggccttaac
gacaggcaggcggaggctgtccagtaccggggacccgccctgctgatcggagcaggtgca
ggctcgggcaagacccgcgtgctgacccgccgaatcgcttggatactcagtcagttcggt
gcctggcccagccaggtcctggccatcaccttcaccaacaaggccgccgcggagatgcgg
gagcgtctgggtgggctcattggccctgttgctgagcgcatgtgggtctccaccttccat
tcggcatgtgtcagaatcctcagacgcgacgggaaggccatcggtctgcgttccgggttc
tccatctatgacactgctgattgcgagcggctcatcaagctgatcgggcaggatctgaat
attgacctgaaacggtatacccccaggaacatcctttcccacatctccgattacaagaac
aacctccagggctggcagacccagctggcagagtacgctcccgattacaaacccggcgaa
aagggacagcagatcgttgctcggttcggcaatgaggaggagctctattcggtcgtctat
gccgagtaccaacaccggttggccatggccaatgccgtggactttgatgacctgatagtc
cgaaccgtggaactcctgcagaaggcacccatggtggcccagtactaccatcgtcgcttc
cgatatatcctggtcgatgagtaccaggacaccaaccacgcccaatatgtgctcatgcga
gaactggctggggtaggtcaggggcgggaaacccatgaagatgtacagcacatgaatggg
ttcggtgctcctggggcccctggagcgaatacggccgccatcccgctaggtgcggggagg
gagggtcccgcctggattaccgtggtcggtgattccgatcagtccatctatgccttccga
ggtgcggatatcagcaatatccgcgatttcgagaaggacttccccggagccaggaccatc
cttctggagcagaactatcggtccacgcagaccattctggacgcagccaatgccatcatc
gtcaaaaacgagggcaggaagccaaagaaactctggacagcactgggtaaaggggaaccg
attgtcggctacgcggccgacaatgcccaacaggaggccgcctggattgcgaccgaaatc
gcccgtctccgcaatgaggagggcatacactactccgacatggccatcatgtaccgggcc
aacgcccagtcgcgggcacttgaggaggccctgatcaacgcaggattgccctaccagctg
gttggtgggacgaagttctatgaacgccgggagatcaaggatgcgcttgcctacctgcat
gccatagccaatcccgaagatgatgtgaatatgaggcgcatactgaatgtgcccaaacgc
ggcctgggtgcaagggctgaggcggcggctgctacctatgccgaccttcatggcacgagt
ttctggaccggggtggagcacctggacgaggtggagggtatctccacgcttacctccaag
cggatggccaccttccgagatctcatccggtccctgacagcgtttgccgccgagcatgac
tccaaaccctcggagattgtggcggaggtacttgatgagtcggggttgctggacgagctg
aacaagtcgaccgatccacaggatgcctcccgggtcgagaacctgtcgcagttacagtcc
gtggcggcggaattcgagcagaagaccccggatgcctccctggccgggttcctggagacc
accgccctggttgccgattccgatcagctgcctggcatcggtgacgattcagggaaggtg
accctgatgacgctccatacagccaagggacttgaatatccggtcgtcttcctcaccggc
atggagcagggcacattcccccattcccgaagcctggaggatgccaccgagctgcaggag
gagcgacgcctggcttatgtcggtgtcacccgagccaaacaacggctctatctgaccaga
tccgctgtccgcgcccagtgggggcagtccaacgagatgctgcccagccagttcctcgat
gatatccccgaaagcctccttgattggaagcgtaaggaggcgggcttcgaacgcatgcac
tcaggctggggctttggcgatgatgacgatgagttcggcgggttcgaagacgaaggtgac
ggagcctccttcggcggcagggccttcggcggaagcggtaccgaatcgcgatcgggatcc
tcctggtcacgtgggtccagtcgctcgggcggttcctcacgcagttcatacgggtccaga
gggtacggttcacagcggggtggtggatcgtggtcttccggttcaaggcggaatggaagg
attaccaccaggcgcagcggtcagggttcgggattgaaatccaagccagccgcagcgccc
gccgagcccagatcgaacgggctgtccattcaggacttctctatcggtgacagggtggcc
catgatcagtatgggctgggcaaggtggttgatgtccaggataagggacacaactcggta
ctaaccgtggacttcggctccgagggaaccaaacgactgatgctacgcctggcccccatc
gagaagctctga
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