Bifidobacterium indicum: BINDI_1172
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Entry
BINDI_1172 CDS
T03564
Name
(GenBank) ribonuclease E/G family protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bii
Bifidobacterium indicum
Pathway
bii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BINDI_1172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bii03019
]
BINDI_1172
03009 Ribosome biogenesis [BR:
bii03009
]
BINDI_1172
Enzymes [BR:
bii01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BINDI_1172
Messenger RNA biogenesis [BR:
bii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BINDI_1172
Ribosome biogenesis [BR:
bii03009
]
Prokaryotic type
rRNA processing factors
BINDI_1172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AIC92433
UniProt:
A0A087VVY0
LinkDB
All DBs
Position
complement(1483167..1485989)
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AA seq
940 aa
AA seq
DB search
MPRNKNEDSQEDSSANSMQTSQQASDQPQAEKGTTRRRRSGRRVVRVAGAAGAHVPVQVE
ADEHEEAASDKGRRRRVKVQDDGGDTRSESVSRRRSHRNDPEQEPGLSESQALDRDVTEE
DAEAPTSRRRKVQTRSRRSNRAKASESTESGSRSRSGAGRDVEDERDDRQERALEAVESL
TGTDPGDDDQDRKSRSTRSRSRSSRSGSSQSAPARPMTSLLFQEPVIPVVQDDDDEPVME
DDEEPAPTRSSRRSRSRRSRNAIDRESLAEDEERSESGSRRSRRLNAEERRAADEVEQIE
EDLDHEGITFINDEDESEEEVTSRSSRRRRRSKGERTHEDETEKSGSRRNRRSRDHESEE
EEEGGLTRRRRRRRGSKSSDSESEETGGTRRSRKQQYIDEITDIEGSTRLEAKKQRRRDN
RRERSRQSQLVEQDFLARRESVNRLMVVREKEQHTQISVIEDDILVEHYVSDIQEVSTVG
NVYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEVNWDTTRLEGQPRRIELAFKSGDPVLV
QVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLADHERSRLKGIISRIAPKDM
GVIIRTAADGASEEALTKDLENLQRQWEEIESKRKEFLHGKRPKLLQGEPDVAIRVVRDI
FNDDFASLVVQGDRVYDRVENYLDTMAPDLRDKLVGWDPSEHEGKDVFDKWGIDSQLRKG
MERQVYLPSGGSLVIDRTEAMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLR
DIGGMIMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRVGQGLV
EAFSEECPTCHGRGFILHDEPTISASYDDPYAVKGGDPFVKTNKHSHNAPAKESTTTGST
PAVKAKLARIAAAAQAAADEDVQDDDEMEATNPLDVDKES
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
gtgcccaggaacaagaacgaggacagtcaggaagactcctcagcaaactcaatgcagacc
agtcagcaggcgtccgaccagcctcaagccgaaaagggaacaactcggcgccgccgcagt
ggcaggcgcgtggtgcgcgtggccggtgcggccggtgcccatgtgcccgtccaggtcgag
gccgatgagcatgaggaggcggcctccgacaaggggcgtcgtcgccgtgtcaaggtccag
gacgatggtggggatacccgttcggagtccgtttcccgtcgccggtcacacaggaatgat
ccggaacaggaaccgggcctgagtgaatcgcaggctttggacagggatgtgaccgaagag
gacgcggaggcacctacctcccggcgccgtaaggtgcagaccaggtcccgcaggtcaaac
cgcgccaaggcctcggaatcgactgaatccggttcccgcagccgttccggcgctggccgt
gatgtcgaagacgagcgggatgaccgccaggaacgtgctctggaggccgtggaatccctg
accggtaccgatccgggggatgatgatcaggaccgcaagtccaggtcgaccaggtcccgg
tcccgttcgtctcgttccggttcgtcccagtcggcaccggcccggcccatgacctccctc
ctcttccaggagccggtgattccggtggtgcaggatgacgatgacgagcccgtcatggag
gatgacgaagaaccggcgcccaccaggtcatcccgcagatccaggagccgccgctcccgc
aatgccatcgaccgtgagtctctggcagaggacgaggagcgttccgaatcgggatcccgt
cggtcgcgaaggcttaacgccgaggagcgtcgtgccgccgatgaggtggagcagatcgag
gaggacctcgaccatgagggcatcaccttcatcaacgatgaggacgagagtgaggaggag
gtcacctcccgctcttccaggcgacgtcgtcgcagcaagggtgagcgcacccatgaggac
gaaaccgagaagtccggttctcgtcgcaatcgccgctcgcgcgaccatgagagtgaagag
gaggaagaaggggggctgacccgtcgacgcaggcggaggcgcggctccaagtcttccgat
tccgaaagcgaggagaccggcggtacgcggcgctcccgcaagcagcagtacatcgacgaa
atcacggatatcgaggggtccacccgcctggaggccaagaagcagcgccgccgcgacaac
cgtcgtgagcgttcgcgccagtcccagctggtggagcaggacttcctggcccgccgtgag
agcgtaaaccggctcatggtggtgcgtgaaaaggaacagcacacacagatctcggtcatc
gaggacgacatcctggtggagcactatgtctccgacatacaggaggtctccacggtcggc
aacgtctacctggggcgggttcagaacgtcctgcccagcatggaggcggcctttgtcgat
atcggacaggcccgcaacggcgttctctacgcgggtgaggtcaactgggacaccacccgt
ctggaggggcagcctcgacgtatcgagctggccttcaagtccggtgatccggtcctggtc
caggtcaccaaggatccgatcgggcataagggtgcccgtctgacctcccaggtgaccctg
gccggacgtttcctggtcctggtgccctccgggggcatgaccggcgtcagccgtaagctg
gccgaccatgagcgctcccgtctgaagggaatcatctcacgtatcgcccccaaggacatg
ggggtcatcatccgcaccgcggccgatggtgccagcgaggaggccctgaccaaggacctg
gagaacctccaacgccagtgggaggagatcgagtccaagcgcaaggagttcctgcacggc
aagcggcccaagctccttcagggcgaacccgatgttgccatccgtgtggtgcgggatatc
ttcaacgatgatttcgccagtcttgtcgtccagggcgatcgggtctatgaccgggtcgag
aactacctggacaccatggcccccgatctcagggacaaactggtggggtgggacccgtcc
gagcatgaaggcaaggacgtgttcgacaagtggggcatcgacagccagctgcgcaaggga
atggagcgtcaggtctacctgccctccggcggttccctggtcatcgaccgtaccgaggcc
atgaccaccatcgatgtcaacacaggacgattcatcggcaggggcaagtccttggaagag
accgtgaccaggtgcaacctggaggcctccgaggagattgcccgccagctgcgtctgcgc
gacatcggcggcatgatcatgatcgactacgtggatatggtcatgccggccaaccgcgac
ctggtgcttcgccgtctggtggagtgcctggcccgggatcgcaccaagcaccaggtggcc
gaggtcacctctctgggtctggtccagatgacccgcaagcgggtgggccagggcctggtc
gaagccttctccgaggagtgccccacctgccatgggcgcgggttcatcctccatgatgaa
ccgaccatctccgcctcctacgacgacccctatgccgtcaagggcggggatcccttcgtc
aagaccaataagcacagccacaatgcgccggccaaggagagcacgaccaccggttccacc
cccgctgtcaaggccaagctggccaggatcgcggcagccgcccaggccgctgcagacgag
gacgtgcaggacgatgacgagatggaggccacgaatccgctggatgtcgacaaggagtcg
taa
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