Bombus impatiens (common eastern bumble bee): 100740784
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Entry
100740784 CDS
T04362
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
bim
Bombus impatiens (common eastern bumble bee)
Pathway
bim04382
Cornified envelope formation
bim04512
ECM-receptor interaction
bim04518
Integrin signaling
bim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bim00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100740784
04518 Integrin signaling
100740784
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100740784
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
100740784
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bim04147
]
100740784
00536 Glycosaminoglycan binding proteins [BR:
bim00536
]
100740784
Exosome [BR:
bim04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100740784
Glycosaminoglycan binding proteins [BR:
bim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100740784
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100740784
NCBI-ProteinID:
XP_024225532
UniProt:
A0A6P6FE20
LinkDB
All DBs
Position
Unknown
AA seq
1941 aa
AA seq
DB search
MTRLGLRFVASAVFLAGIVGGQYNHTSWSYNPPPVVPLGRGDIGKPNSTDDDYNISPRWR
AFVTNNEDSEEDRRYLNNQGQGYQGQNYDDRYNRYPDSDDYNQRTDDSGGYQTNYGGLDQ
ESYNQGQDQIPLDPYNQEAGDPYGRPGGYEDSYRRGEAGGEQRSRDSSGDGYDRNYGSRD
DYGRGDPYGQRGYSSGQRGGYGAAGDSDNYPSSYTVVPVPGYKPQRNCTGSACCVPKCFA
EKGSRGPPGVMGPQGPKGQKGFPGTEGLLGPKGEKGDPGPQGLRGPKGDRGKMGIPGFSG
ISGVPGVQGPPGAPGLPGRDGCNGTDGEPGPAGRPGDTGPRGYPGPRGPKGDKGQSGFAG
RFPVGQKGEPGIDGVRGPPGQPGLQGERGFPGPKGDRGPYGPPGLQGPRGEKGNMGLAFE
GPKGDKGQKGEQGPPGSPAVGGFLHPGEEIAGPQGERGEKGDTGERGSDGQKGEQGPIGD
HGIPGTAGMKGEKGLPGAPGIRGRDGFSGPPGPPGRKGDRGYDGLDGLSGRPGQKGEPGR
DGPMGVPGLRGPPGPPGGGKGTPGPPGPKGPQGFPGPTGPRGADGYPGDPGPRGPIGPSG
GPGLAGIPGPEGLPGEKGAKGEPGITGFPGPTGPRGFDGPPGLAGSRGLPGEKGASIMGP
KGMDGAPGRDGEKGQKGERGYAGPRGVPGDVDGIPGAPGEPGLPGEPGTPGKNGIPGFPG
SPGEKGEIGGRCIDCLPGLPGIKGDRGFDGQPGLPGPRGPAGERGFPGEPGSDGLPGPIG
PPGPPGKDGIPGAAGPQGEPGIPAVVTENMLKVEKGDKGVRGPVGRDGPPGLPGPPGEKG
PMGFEGFPGPKGVAGDRGFPGQDGIPGRPCVPGRKGEPGVSVKGEHGEPGRRGETGAKGE
PGPLGDKGEPGLCPIPDELIKGIKGDRGAPGEKGEPGPPGRDGLSGDKGLQGISGPPGPP
GSIGAPGPVGPRGLPGPRGDKGNIGPMGFPGESGREGPRGFPGAAGLKGAKGEVGISVKG
SPGLPGPPGEKGEKGLPGPPGKEGPDGLPGLPGFSGEKGDAGIPGIGGLPGAPGEKGDTG
PMGPPGPPGVAGIPGIDGNKGEPGLPGEAGKPGLPGFPGIKGDRGEPGIDGSKGYPGRRG
LPGLQGRPGIEGAPGLKGERGEKGAPGFPGLRGMEGKPGRPGLIGPKGDIGHPGLPGLPG
TIGFQGPKGDQGLPGLPGRKGEPGLVSEKGQKGEPGMPGIRGPVGPPGRDGIDGDKGERG
LSCNCLDGLPGLKGEPGLPGRDGLPGPIGLKGDAGVRGFHGSQGDIGPMGPPGEPGTPGI
DGLPGEPGDIGPPGPPGFPGLDGDVGAPGHPGLNGGKGDRGLPGLVGESGIRGMPGEKGD
RGQPGPTVAIKGEKGEPGMPGLRGVAGEKGDRGEEGLAGYDGEKGDRGTPGPVGNPGSPG
LPGPKGEEGPRGPTGIAGLTIKGEKGLPGLPGKHGREGVPGRPGEKGERGLPGLPGHKGD
QGPYGPVGPQGEKGDMGLMGAPGLPGQDGAPGHRGLSGQIGPKGEKGDNCIPEPGLPGQK
GEPGYPGVSGIDGLPGEKGDRGWPGLEGPPGLDGEKGERGFPGPMGKMGAIGFVGQKGDK
GLDCLEPPMGPKGDRGYPGLTGPPGSPGEKGASGQPGFPGSHGMKGAPGPQGPSGPVGLP
GLQGPVGAPGLPGLQGPVGHPGEPGEPGLPCEAAPDYLTGILLVKHSQTDRVPVCDAGHI
QLWEGYSMLSTDGNERSHSQDLGHAGSCVRKFSTMPFLFCDTGNVCNYASRSDRSYWLST
TKAIPMMPIEGTAIEEYISRCVVCEVPANVIAVHSQSLNIPDCPHGWTGLWIGYSFVMHT
GAGAQGGGQSLSSSGSCLEDFRTTPFIECNEEHCHYYSNEISFWMTTIEDRLQFQRPEKQ
TLKAGNLRSRISRCQVCIKNT
NT seq
5826 nt
NT seq
+upstream
nt +downstream
nt
atgacccggttgggattgcgattcgtcgcatccgcagtgttcctggccgggatagttggt
gggcaatataaccacacatcatggtcgtacaatcctccgcctgttgtaccacttggacga
ggtgatattggaaaaccaaatagtacagacgacgattataatatttcaccacgatggagg
gcttttgttacgaacaacgaagattctgaggaagataggcggtacttaaataaccaaggc
caaggctatcaaggtcagaattacgatgatcgatacaacagataccctgatagcgatgac
tataatcagagaactgatgattccggcggatatcaaactaattatggaggcttggatcaa
gaatcctacaaccaaggtcaagatcaaatcccgttggatccttacaatcaagaagctggc
gatccttacggaagacctggaggttatgaagactcttacagaagaggagaagccggagga
gaacaaagatccagagattcttctggcgatggctacgatagaaattatggatccagagac
gattatggacgcggagatccttacggacaacgcggatactcttcagggcaacgtggagga
tatggcgcggccggagattcggacaattatccgagcagttacacggttgtgccagttcca
ggatacaagccacaacgaaactgtaccggatcggcctgctgcgtgccaaaatgtttcgcg
gagaaaggttccaggggaccgccaggtgtaatggggccacagggacctaaaggtcaaaaa
ggatttcctggaacagaaggtcttttgggaccaaagggagaaaaaggtgatcctggtcct
caaggactacgcggtccgaaaggtgacagaggtaaaatgggtatacctggattctccggt
ataagtggtgttcctggagtacaaggtccacccggagctcctggtctacctggtcgtgat
ggctgcaatggaacagacggtgaacctggtcctgctggtcgtcctggagatacaggccct
cgtggttatccaggtcctcgagggcccaagggagacaaaggtcaatcagggttcgccggt
aggttccctgtaggtcaaaagggagaaccgggtatagatggtgtcagaggacctccagga
caaccaggattacaaggagagcgtggatttcctggacctaagggtgatcgtggtccttat
ggtccgcctggtctacaaggaccaagaggagaaaagggaaacatgggtcttgcgttcgaa
ggtccgaaaggtgacaaaggtcagaagggagagcaaggacctcctggatcgcctgcagtc
ggcggctttctacatccaggagaagaaatagcaggtccacagggagagcgtggtgaaaaa
ggagacacgggtgaaagagggtcggacggtcaaaaaggagaacagggaccaattggtgat
catggtattcctggtactgcaggtatgaaaggagaaaagggtcttccaggcgcaccaggt
attcgtggacgggatggtttctctggacctccaggtccgcctggacgcaaaggtgatcga
ggttatgacggattagacggcctttcaggtcgtcctggacagaaaggagaaccaggtcga
gatggacctatgggtgttccaggtttacgaggaccacctggtccacctggaggtgggaaa
ggtacgccagggcctccagggccaaaaggacctcaaggttttccaggacccactggaccg
cgtggtgccgatggatatcccggagatccaggaccaagaggtcctattggaccatcagga
gggcctgggttagcaggtattcctggtccagagggtttaccaggagaaaaaggagcaaag
ggagaacctgggatcacaggattccctggaccaacaggtccccgtggatttgatggcccg
ccaggtttagcaggttcacgagggctgccaggagagaaaggagcgtcgattatgggcccc
aaaggaatggatggagcgcccggtagagatggcgagaaaggacaaaaaggagaacgcggt
tacgcaggaccgcgtggagttcctggcgacgtggatggtattccaggagcgcccggagaa
cctggtttaccaggagaaccgggaacgccagggaaaaacggcattccaggatttccagga
tcacctggtgagaagggagagataggagggcgttgtatagactgtctgccgggattacca
ggaatcaaaggtgatcgtggtttcgatggacaacctggacttcctggtccacgaggtccg
gctggagaacgaggattccccggagaacctggcagcgacggattacctggaccaattggg
ccaccagggcctccgggaaaagatggcattcctggtgcagcaggtccacaaggagaacct
ggtattccagcagtggttacggaaaacatgcttaaagtagaaaagggcgataaaggtgtg
agaggtccggtaggaagagatggtccacctggtcttcctggtccgcctggagaaaaaggt
ccgatgggatttgaaggtttcccaggaccaaagggtgttgctggagatcgtggattccct
ggtcaagatggtattcctggaagaccatgtgttcctggtcgaaaaggagaacctggtgtt
agtgtgaaaggagaacatggagaaccaggccgaagaggtgaaacaggtgcaaagggcgaa
cctggtccactaggagataaaggagaacctggtctgtgtccaattccggatgaattaatt
aaaggaattaaaggcgacagaggtgctcccggtgaaaaaggagagcctggcccacccgga
agggatgggttaagcggtgacaaaggtttacaaggtatttcgggcccacctggaccaccg
ggatcaattggtgcacctgggccagttggaccaagaggattaccaggtcctcgtggtgac
aagggtaatataggaccaatgggtttccctggggaatctggtcgtgaaggacccagaggg
ttcccaggcgctgcagggttgaaaggagcaaaaggtgaagttggtatctcggtcaagggc
agtcctggattgccaggaccaccgggagaaaagggagagaaaggtcttccaggaccacca
ggaaaggaaggtcctgatggtctgccgggtctgccaggattttccggagagaagggtgat
gcaggtattccaggcataggtggtttgcctggtgcgccaggagaaaagggagatactggt
ccgatgggacctccaggcccgcctggtgttgctggaattcctggtatagatggaaataaa
ggtgaaccgggattgccgggcgaggctggcaaaccaggactcccaggattcccaggtatc
aaaggtgatcgtggcgaaccgggtatcgatggatcgaaaggttacccaggaagacgtggt
ctacctggtttacaaggtagacctggtatagaaggtgcacctggtttgaaaggagaacga
ggtgaaaaaggcgcccctggtttccctggattacgtggaatggaaggaaaacctggccgc
cctggattaattggaccaaaaggagatataggtcatcctggtctgcctggtcttcctgga
actatcgggttccaaggacctaaaggtgatcaaggtttaccaggattgccaggacgcaaa
ggagaaccaggtctagtttctgagaaaggacagaaaggtgaaccaggaatgccaggtatc
cgtggtcctgttggtcctcctggtagagatggtattgacggagacaaaggggaacgtgga
ttgtcgtgtaattgtttagacggattgccaggtcttaagggagaacctggtctgccaggt
cgcgatggtttaccaggacctatagggctaaaaggtgacgctggagtaagaggtttccat
ggttctcaaggagatataggaccaatgggtccaccaggtgaacccggaacacctggaatc
gacggattaccaggcgagccaggtgacatcggtccaccaggtccacctggtttccctggt
ttggatggtgatgtgggagctccaggacatcctggcctcaacggtggcaaaggagaccgt
ggtttgccaggtcttgttggggaatctggtatccgtggtatgcctggagaaaaaggtgac
cggggacaacctggaccgacagttgcgatcaaaggtgagaaaggcgaaccaggtatgcca
ggattacgaggtgtagctggagagaaaggagatcgtggtgaggaaggtctagctggttat
gatggcgaaaaaggagataggggcacaccaggtccagttggaaacccaggttcacctggc
ctccctggacctaaaggtgaagaaggtccacgtggacctacgggaattgctggattaact
atcaagggtgagaagggtttaccaggtctgccaggaaagcacggacgagaaggagtacca
ggacgaccgggagagaagggagaacgaggattacctggtttaccaggacataaaggagat
cagggaccttatggacctgtcgggccacagggcgagaaaggagatatgggacttatgggt
gctcccggtttaccaggtcaagatggtgctccaggtcatagaggactctcgggtcaaata
ggtccaaaaggtgaaaaaggtgacaattgtataccagaaccaggtctgccgggacaaaag
ggagaaccaggatacccaggagtttccggaattgatggactccccggtgaaaaaggtgac
agaggttggcccggtctagagggtccacctggtctggatggagagaaaggtgaaagagga
ttcccaggtccaatgggaaaaatgggtgctattgggtttgttggtcagaagggtgacaag
ggtctcgactgcctcgaaccaccgatgggaccaaaaggagaccgtggttatcctggactg
actggcccgccaggctcgccaggagagaaaggagcttcaggtcagccaggattcccagga
tcgcatggaatgaaaggtgcaccaggacctcaaggaccatcaggtccagttggattacca
ggactgcaaggacctgttggtgctcctggtttaccaggtcttcaaggacccgtgggtcat
ccgggtgaaccaggagaaccaggactaccatgcgaagctgcgcctgactaccttactggt
atcttgctagtaaaacacagtcaaactgacagagtgcctgtttgtgatgcaggacatatc
caactctgggaaggatacagtatgttatctacggatggcaatgaaagatcgcactcacaa
gatttaggtcatgccggctcgtgcgtgcgaaagttctcgacgatgccgttcctcttctgc
gacaccggcaacgtttgtaactatgcaagtcgtagcgatcgttcttactggttgtcgacc
actaaagcaattcccatgatgcctattgaggggacagcgatagaggaatacatctccaga
tgcgtggtttgcgaggttccagcgaatgtgatagccgtacacagccagtcattgaatatt
ccagattgtccacacggatggaccgggctttggatcggatacagttttgtcatgcatacg
ggtgccggtgcccagggtggaggacaatccttgtccagttccggatcctgtctggaagat
ttccgtacaacgccatttatcgaatgtaacgaagaacactgccattattactcgaacgag
atcagcttttggatgacgacgatagaggacaggcttcagttccaaaggcctgagaaacag
accttgaaggcaggcaatctcaggtcccgaataagtcgctgccaagtgtgtataaagaac
acgtaa
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