Bombus impatiens (common eastern bumble bee): 100743696
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Entry
100743696 CDS
T04362
Name
(RefSeq) fibril-forming collagen alpha chain
KO
K19719
collagen type II alpha
Organism
bim
Bombus impatiens (common eastern bumble bee)
Pathway
bim04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
bim00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100743696
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bim00536
]
100743696
Glycosaminoglycan binding proteins [BR:
bim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100743696
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
100743696
NCBI-ProteinID:
XP_012249489
UniProt:
A0A6P3V6M9
LinkDB
All DBs
Position
Unknown
AA seq
1508 aa
AA seq
DB search
MGPKALRLAAAFAVIQLLLPQVHSIRTKLRKQRSKPLQAQQAANGEYDYDYYEGYDDYDD
RNETTTTTAPSPPVTSSVNTASRGELPTETLQTFYRPGLSTDVPTQATIRTFSQVGILPN
EVQTTPEQNHASPTEIVPGESNVISAVAVPGPRGEPGRPGDMGRPGDAGFPGHPGSPGIP
GPPGPPGPIPDVSMYYQQLALSQANQDKGPTGAAAPLYGPEAYLQMQTGPIGPRGPSGPP
GPPGPQGFQGVRGEPGEPGTLGPPGAPGPRGLAGLPGKDGNTGEDGEPGPPGSVGPVGPR
GLPGMPGLPGVKGHRGFPGLDGAKGEQGVSGEKGSMGVPGPMGHVGPMGPAGPRGERGRE
GPPGPPGIRGVDGIAGPPGQPGTVGKPGSPGFPGSPGVKGDQGAQGPKGSQGIQGPRGET
GRPGQPGESGPQGPQGKDGIPGEKGSTGAAGLVGAPGFPGARGQPGIPGNPGVPGAKGMP
GLSGERGFKGDSGAKGDSGTPGPRGLPGPPGNEGKRGKRGMRGPIGTSGPAGERGAPGAP
GLPGPDGPMGPKGQSGDRGPIGPMGLRGANGDPGRPGSPGLQGTRGLMGRPGAPGKPGNP
GDRGIQGADGKPGEQGPAGLQGLPGPIGLPGEKGYPGEPGKAGEPGNPGPPGPRGDTGKE
GAPGPQGSPGPSGVDGERGPPGSPGPRGFQGFPGVTGNPGTPGKDGESGVQGPPGPPGIP
GNRGERGFPGERGTPGGPGLTGPRGEPGAQGLDGPPGLPGAKGDRGISGPPGLVGLPGLR
GATGESGPKGERGSSGPPGPEGPSGRIGERGPQGQIGSPGPPGEPAERGDPGLPGPPGEV
GAPGNPGERGPQGLQGLQGFPGPQGLIGLPGLKGDRGYPGLKGDQGNPGLPGSPGETGPQ
GLVGLTGAKGVRGEPGARGEPGIMGPPGVPGIVGATGPPGAIGPSGPPGLPGSKGNIGET
GRAGNPGPIGNPGSPGADGNKGESGSQGPPGTPGPQGPQGSPGERGLPGLPGPSGPIGAR
GIRGAPGESGVPGKPGPEGPPGPPGQVGPIGPHGPSGEIGPEGPSGKPGPPGIAGRPGDK
GPPGAVGQTGLPGSPGLPGPPGQAGAPGSTGERGPKGETGPQGVEGQQGPRGKPGPVGLE
GPKGDRGEEGQKGAKGHRGFTGLQGLPGPTGLPGEKGIPGLPGLPGKDGESGPRGSPGRD
GSPGPIGLTGNPGPKGPSGEEGRHGPPGPPGPPGPPGPPGELGLGYDAASLAALLGQGQT
KGPDPLVGDEPPRMFSQDMTEEERKELILKAYKQLKSSFQKFVKPDGGKSSPAKTCRDLY
TAYPDKLSGEYWIDPNEGDTRDAILVYCDAKKRATCLLPNPVRSPEINYITDQPETWLSE
IENGMKITYKADSNQIGFLQLLSRHAYQNIIYHCKNSIGYFDSERKTYRKGMKFLTWNDV
ELTPRGNQRLRYEMITDECRTYNGQWGKTVISYETDKPVRLPIIDVALRDIGKPDQSFSI
EIGTVCYE
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atggggccgaaggcccttcggttagccgcggcgttcgccgtcatccaacttcttttgccg
caggttcattccatacggaccaaactcaggaaacaacggtccaagccgctgcaagctcaa
caagccgccaatggtgaatacgattacgactattacgagggttacgatgactacgatgat
agaaatgaaactacaactacaactgcgccatcaccacctgttacgtccagcgtcaatact
gcaagcaggggtgaattaccgacagagacattgcaaactttctacagacctggactgtct
acagatgtaccaacgcaagcgacaattagaactttcagtcaagtcggtatattaccaaac
gaagtgcaaacaacaccagaacaaaatcatgcatcaccgacagagattgttcctggtgaa
agtaacgtgattagcgcggttgctgttcctggacccaggggcgagcctggtcgacctgga
gatatgggtcgtccaggagatgctggatttccaggacaccctggatctccgggaattccg
ggacctccggggccaccagggcctatacctgacgtatcaatgtattatcaacaattagct
ttatctcaagcaaatcaagataaaggaccgacgggagcagcagcacctttgtatggtcca
gaagcctacttacaaatgcaaactggtcctattggaccgcgtggtccatcaggtccacct
ggaccacctggaccacagggttttcaaggagtacgaggagaacctggtgaacctggaact
ttgggtcctccaggagcgccaggtcccagaggattagctggtttaccgggaaaggatggt
aataccggtgaagatggagaacctggtcctccaggatcggttggtccagtcggaccaaga
ggtctaccaggaatgcctggtcttcctggtgtaaaaggacaccgaggttttccagggtta
gatggtgcaaaaggggaacaaggtgtatctggtgagaaaggatccatgggcgtacctgga
ccgatgggacatgtaggcccgatgggccctgcaggtccacgtggtgaaagaggtagagaa
ggtcctcctggacctccaggaattagaggagtggatggtattgctgggccccctggtcaa
cctggtacggtaggtaaaccaggttctcctggatttccaggtagtccaggtgtaaaagga
gatcaaggagcacaaggaccaaaaggaagccaaggcatacaaggccctcgaggtgaaact
ggtcgtcctggtcaacctggtgaatcaggaccgcagggtccccagggaaaagatggaata
cctggagaaaagggaagtacaggagcagctggtttagttggtgctccaggtttccctgga
gctcgcggacaacctggaatacctggcaatcctggtgttccaggagcgaagggcatgcct
ggactttcaggtgaaagaggattcaaaggtgatagtggagctaaaggtgattcaggaact
ccaggaccacgtggtttgcctggtcctcctgggaacgagggtaaacgaggaaaaagagga
atgcgcggaccaattggtacatccggtcctgccggagaacgtggagcaccaggcgcacca
ggtcttccgggacctgatggccccatgggacccaaaggtcagtctggagatcgtggacca
attggaccaatggggctcagaggagctaacggagatcctggtcgcccaggatctcccggt
ttacagggcacacgtggtttaatgggtcgccctggtgctcccgggaaaccaggaaaccca
ggagaccgaggaattcaaggtgctgatggaaaaccaggtgaacaaggtccagctggatta
caaggtttacctggtccaataggtctcccaggagaaaagggatatccgggtgaaccagga
aaagctggtgagccgggaaatcctggaccacctggacctagaggtgatacgggaaaagaa
ggagcaccaggacctcaaggttcacctggaccatcaggtgtagatggtgaacggggacct
ccaggatctccaggtcctagaggttttcagggtttcccaggcgttactggtaatcctgga
acaccaggaaaagatggagaatcaggtgttcaaggaccacctggtccaccaggtatacct
ggaaatagaggtgaacgaggatttcctggtgaaagaggtacaccaggaggaccaggatta
acaggaccaagaggagaaccaggtgcacaaggattagatggacctcccggattacctgga
gcaaaaggagatcgaggaatttcaggaccacctggattagtaggattgcctggcttacga
ggagctacgggagagtcaggcccgaaaggagaaagaggatctagcggaccgcctggccct
gaaggaccttcaggacggattggagagcgtggcccacaaggtcaaattggctcaccggga
ccgccaggtgaaccagcagaacgaggcgatcctggattacctggacctccaggagaggta
ggtgctcctggcaatccaggagaaagaggaccccaaggattacaaggactgcaaggcttc
ccaggaccacaaggactcattggtttaccaggattaaagggtgaccgtggttatccaggt
ttaaaaggagatcaaggaaatcctggtctacctggtagcccaggtgaaactggaccacaa
ggtctagttggtttgacgggagctaaaggagtacgaggagaaccaggtgctagaggagag
cctggtattatgggaccaccaggagtaccaggaatcgttggtgcaacgggcccgccaggc
gcaataggaccatcaggaccgcctgggttaccaggtagtaaaggtaatattggagaaaca
ggacgagccggaaatcctgggcctattgggaatccaggttcacctggtgcagatggaaat
aaaggcgagagtggttctcaaggaccaccaggtactcctggtcctcagggtcctcaaggc
tcccctggcgaaagaggattacctggtttaccaggtccgtctggaccaataggcgctaga
ggaatacgaggagcacctggtgaatccggtgtacctgggaaacctggaccagaaggtcca
cctggacctcctggacaagttggaccaattggaccacatggaccatcaggagaaattgga
ccagaagggcccagtggtaaacctggaccacctggaatagcaggtcgtcctggagataag
ggaccaccgggagcggtaggacaaacgggattacccggatctcctggtttacccggacca
cctggtcaagcaggtgctccaggatcaactggagaaagaggaccaaagggcgaaacagga
ccacaaggtgtagaaggacaacaaggacctagagggaaaccaggacctgtaggattggaa
ggtcctaaaggtgatcgcggagaagaaggccagaagggtgcgaaaggccatcgaggattt
actggtttacaaggtttacccgggcctactggtctaccaggggagaaaggaatacctgga
cttcctggactacctggaaaagatggcgaatctggacctagaggtagtcctggacgagat
ggcagccctgggccaattggattaactggcaatccaggaccaaaaggtccttcaggtgaa
gaaggtcgccatggaccaccaggtcctcctggtcctccagggcctccaggtccaccgggt
gaacttggattaggatatgatgctgcttctttagctgcacttttaggacaaggtcaaact
aaaggaccagatccattagttggtgatgaaccacctagaatgtttagtcaagacatgaca
gaagaagaaaggaaagaactcattttgaaggcatataaacaattgaaatcatcattccag
aaatttgtaaaaccagatggtggaaaaagttcaccagccaaaacttgcagggacctttat
actgcatatccagataaactttctggagaatattggattgatcctaacgaaggtgataca
agagatgcaattttagtgtattgtgatgctaagaaacgtgcaacatgtttattgcctaat
cctgtacgttccccagaaattaactatattactgatcaaccagaaacttggttaagcgaa
atagaaaatggaatgaagattacatataaagcagacagtaatcaaattggctttttgcaa
cttctatcgagacatgcataccaaaatataatatatcactgtaaaaatagcataggctat
tttgattctgaacgaaagacatatagaaaaggtatgaaatttttaacctggaatgatgta
gaattaacaccacgtggaaatcaacgtctaagatatgaaatgataactgatgaatgtaga
acatataatggacaatggggtaaaacagtaatttcatatgaaactgataagcctgtaaga
ctacctataatagatgtggccttacgagatattggaaaaccagatcaaagcttttctatt
gaaatcggtactgtttgttatgaataa
DBGET
integrated database retrieval system
