Bombus impatiens (common eastern bumble bee): 100744116
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Entry
100744116 CDS
T04362
Name
(RefSeq) uncharacterized protein LOC100744116 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bim
Bombus impatiens (common eastern bumble bee)
Pathway
bim03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bim00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100744116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bim03021
]
100744116
03019 Messenger RNA biogenesis [BR:
bim03019
]
100744116
Transcription machinery [BR:
bim03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100744116
Messenger RNA biogenesis [BR:
bim03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100744116
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
100744116
NCBI-ProteinID:
XP_012248971
UniProt:
A0A6P3V6H2
LinkDB
All DBs
Position
Unknown
AA seq
1896 aa
AA seq
DB search
MTSTKSKEIADEYISSLSDLTINSKPLINMLTMLAEDNIEHAPAIVQAVENHLQKVRSDI
KLPVLYLIDSIVKNVNGAYLNLFTQNIVNTFCGVFEKVDENTRASMWKLRQTWNDVFPAK
KLFSLDVRVQSIDPAWPITASPTSVSSGSIHVNPRFFSMPQQSATSIVSQPIVAPVKLPP
GDPVTPTEAAMREQLLKKQRELIELQKKKIELELLQAKANLEQQQRQLDKQAGNLKAELV
AVTTHITPSTETVTQGKPVATTVPSQASKQVAKQFPAAAASLLKNAGTNNGPRIAPASSI
AVASAKPVSRDPRLKTTSAQDVPVSSVDPRQRISTPTQKDSRGEGQAQLAAHTNTVLSDQ
LKQQLLSKQAVTSTINKSPTNLAGSDTATLNASNNNNANTNLNNNNNNKNFSGNANKDAV
SHRTSQKKDPRLSSNSSGNLNSNNSKGSQSLSMGSNSSLSASNRGGGNNDSKSKDSKSSN
SRTSSSSAIDKSASSKSSHRKLGNKSRSKQPQTSPCKIPKVDRDASPVRSKSREKDSGDS
SPSSRTSPQSFQNSKNRKKNTKSRKRSPSPPYRIPRRNDAKSNLSLSNSSGVTEEEQSGS
LIVSPPHPPTFKEIRPNARQRNYVRRNKDGSLSPERSPANAGNVQTAVEPTLESSSKDED
LRATLPLPGAAASVLEKKEDLDLRVLPPAVNTNKRQTAEHMESTLVKKTKAEKFDALFGN
EDVDLRTLTHPKAGRPPTPPPPVISGEDGKDGWAKLKTPSKNDREKQANNTDDKRDARDR
NRDRLGRLRLYNKLPDDPKERRRTLSNEDQDNRSGRRGRENDKPEKNEDRNIEIIMKQAA
EQLNQGSITKTQYNTLIQEVLHMSEDRKLRAAQRKEKEVGSIVWEKGVNLDIAGPGERTS
TFSPSGDKEMMRNKDHPIARNPNGPRWQNQPWQQPGPWAHPPGPPYGGPQGHFNSDFRPV
GPWQNPRHFGPMRPDYQYHGGFNHSIGPNPRLGPGMMGPMGPNGPLMSNLLPNGPIGPMG
MPNPPISLPGMNGPGMMINNGPMTSLISNTNMSSLNASRNVSPSSSSKYDIEDGDQNYTT
TMIKNPNPHSRELPPPDSKLLDEIARDTMKSIDIDIQHIPREIRYYGQTGVVFMNWDDPR
EIGFQDGIRRILIDDKITITCAFNDNYKEFIYEGEVHRIKLGAPTRELYIDDRWYECYFG
GMPITVDLGGKKVSVKLEGPPPLVKIGTVKRTDLVVAKINLIINARNMVPVFLDAKPQIF
EIEGKPHTLEFIDSLQTVLLNGRPFKVEFGGLPKPIIVRDKKHFIRFSVLPRGVRPGYVK
IAGMKGEEPIEAPPTPPLLTQKPKVDAASTPTQFSAVEHESTSQDGSDLRSTPKPDLQLD
VLSSALPSAMAPSSGLSYQAEPAENPPTTAPPLSLPLNMNELFQRLVETGIVSNLSEQKK
QEEEEKKEPEIIPVSFDKPETLKVKQTAIAAALYSGMQCSSCGARFAPELATRYSHHLDW
HFRQNRRERDSARKAHSRPWYYDVSDWIQFEEIEDLEDRVQSWFETEKQTADTEGITAED
SPQEASQPSVPTGTDEDSRCQVCHDAFEQFYNEEKEEWHLRPAINFEGKNYHPLCLDDYK
RALEKSALEETIEEMEDEKKESSDETFAEENKTDELSMEALKAEFETVQPSDEIIEDKVP
EDSTEMETNEEETIIEDNADIEQNEKMEEQELECSNKEDVDMESIEKEDSVETEIPETEN
VDKSFENIKIKEEPIDEPEEQLEVEHFDFTNIEIKEEPIEQEPDPEESIITEPATVDTTY
AAVKSSIDGNVELDSTPAAMPAAPSRIKINITKPLCINKEPEDSKEKEKPIIETPTEEII
EPLVPASIKPTLQGRKLSNLPPVERGQELSGLCSIM
NT seq
5691 nt
NT seq
+upstream
nt +downstream
nt
atgacatcaacaaagtctaaggaaatagcggatgagtatatctcatcgctgtctgatttg
actattaacagtaaaccattaattaatatgcttactatgttggctgaagataacatagaa
catgcaccagcaattgtacaagctgttgagaatcatctacaaaaggtgagaagtgatatc
aaattacctgtcctttacttgattgattcgattgtgaagaatgttaatggagcatattta
aatctcttcactcaaaatattgtaaatacattttgtggagtgtttgaaaaggtggatgaa
aatacaagagccagcatgtggaaattgaggcaaacatggaatgatgtatttccagcaaag
aaattattttctttggatgtacgagtgcaaagtattgatcctgcttggccaatcactgcc
tctcctactagtgtttcttctggatctatccatgttaatcctcgttttttttcaatgccc
caacaatcagcaacatctattgtctcacaaccaattgtagcacctgttaagcttccacca
ggtgatcctgtgacaccaacggaagcagcaatgcgagagcaattattaaagaaacagcga
gaactgatagaactacagaaaaaaaagattgaattagaattacttcaagctaaagctaat
ttagaacaacaacagcggcaacttgataaacaagctggaaatttaaaagctgaactggtt
gcagttacaacacatattacgccaagcacagaaactgtcacgcaagggaaacctgttgca
accactgtgccaagtcaagcatcaaagcaagtagcaaaacagtttccagcagcagccgct
tcgcttctgaaaaatgcaggaacgaacaatggcccacgaattgcaccagctagtagtata
gcagtagcatcagctaaaccggtatctcgtgatccaagactaaaaactacctcggctcaa
gatgtaccagtttcaagcgtggatcctcgtcagcgaataagtacaccaactcagaaggat
tcgcggggtgaaggccaagcgcagttagcggcacatacaaacactgtactttcagatcaa
ttaaaacagcagttactttcgaaacaggctgtgactagcactatcaacaagtctccgaca
aatcttgccggctccgatactgcgacgttaaacgctagtaataacaataatgctaatacg
aacctcaacaataataataacaataaaaatttcagtggtaacgcaaataaagatgctgtg
tcgcatcgaacaagtcaaaagaaagaccctcgattgtctagtaatagtagtggtaaccta
aacagtaataattccaaaggttctcaaagtttatctatgggtagcaatagttctttatct
gcgagtaatagaggaggtggaaataacgattccaagtcgaaagactcgaagagttcgaat
tctcgaacttcttcatcttcggcaatcgacaagtctgcttcctcaaaatcctcgcataga
aaactaggtaacaaatcgcgatctaaacaacctcaaacatctccgtgtaaaataccgaaa
gtcgacagagatgccagtcctgttaggtccaaatctcgtgaaaaagatagtggagacagt
tcaccatcctcgcgtacctctccccaatccttccaaaactctaaaaatcgaaaaaagaat
acaaaatcgagaaaacgcagtccaagccctccatatagaattcctaggcgcaatgatgca
aaatccaatttaagtctaagcaattctagtggtgttactgaggaggagcaatctggttca
ttgatagtctctcctcctcatccacctacatttaaagaaatcagaccgaatgctagacaa
agaaattacgtaagacgtaataaggatggcagtcttagtcccgagcgctctccagcaaat
gctggaaacgttcaaactgctgtggaaccaactttggaatcatccagcaaagatgaagac
ttgagagcgacactacctcttccaggtgcagccgcttctgtattagaaaagaaagaggac
ttagatttgcgtgtattaccaccagcagttaatactaacaaaagacaaactgcagaacac
atggaatctacattagtaaagaaaacaaaagctgaaaagttcgatgcattatttggaaat
gaagacgttgatctgcgaacattaactcatcccaaagctggacgaccacctacaccgccc
ccacccgtaatatctggtgaagatggcaaagatgggtgggcaaaactaaagacaccatca
aagaatgacagagaaaagcaagctaataatactgatgataagcgtgatgctagagatcgt
aacagagatagattgggtagactgaggctttacaacaaacttccggatgatcctaaagaa
agaagaagaacattatcgaacgaagatcaagataacagatcaggtcgaagaggtcgagaa
aatgataaacctgaaaagaatgaagacagaaatatagaaataataatgaaacaagctgca
gaacaattgaatcaaggatccattactaaaactcaatacaatactctcattcaagaagtt
ttacatatgagcgaagatcggaaattaagagctgcacaacgaaaggaaaaagaagtaggt
tctattgtatgggaaaagggtgtaaatttggatatagcgggtccaggtgagcgtacttct
acatttagtccttctggtgataaggaaatgatgagaaacaaagatcatcctattgcaaga
aatccaaacggccctagatggcaaaatcaaccatggcaacaaccaggaccatgggctcat
ccgccaggacctccttacggtggaccacaaggacattttaattcagattttagaccagtt
ggtccatggcaaaatccaagacacttcggaccaatgcgacccgactatcaatatcacggt
ggcttcaatcattctattggtccaaatccacgattaggacctggaatgatgggacctatg
ggacctaatggtccgctcatgtcaaatttattacctaatggtccaattgggccaatgggc
atgcctaatccacctatatcattaccgggaatgaacggacctggaatgatgataaacaat
ggaccaatgacaagtcttatatcaaatacaaatatgtcatcattgaatgcttcaaggaat
gtatcgccaagttcgtcttcgaagtatgatatcgaagatggcgatcaaaattatactaca
acgatgataaagaatccaaatcctcatagtcgtgaattaccgccaccagactcaaaatta
ttagatgaaattgcaagagatactatgaaatctatagatatagacatacagcatatacca
cgtgaaatcaggtactacggtcaaactggagtagtttttatgaattgggatgatccaaga
gaaatcggatttcaagatggtatacggcggattttaattgatgataaaatcactataacc
tgtgcatttaatgataattacaaagaatttatttatgaaggtgaagttcatagaattaaa
ttaggtgcaccaacgagagagttatatattgatgataggtggtatgagtgttatttcggt
ggtatgccaataacagtagatcttggtggtaaaaaggttagcgtaaaattggaaggacct
ccaccccttgttaagattggtactgtaaagagaacagacttagtagttgccaaaattaat
cttattattaatgcccgaaatatggttcctgtatttttagatgcaaaacctcaaatattt
gaaattgaagggaaacctcatacacttgaatttatagactcgttacaaacagttctttta
aatgggcggccatttaaagtggaattcggtggactgcctaaaccaattattgttagggat
aaaaagcattttataagattttcggtactgcctagaggtgtccgaccaggatatgttaag
atagcaggtatgaaaggtgaagaacctatcgaagcaccacctaccccgcctctattgaca
caaaagccgaaagtggatgcagcttctacaccaacgcagttctctgctgttgaacatgaa
tcaacgtcacaagatggttcggatcttagatctactcctaaaccggatttgcaattagac
gtgttatcttcagctttaccatctgcaatggcaccatcgtctggattatcttatcaagct
gaaccagctgaaaatccacctacaactgctccaccattatcattaccgctgaatatgaat
gaactgtttcagagattagtagagactggtattgtatcgaatctttccgaacaaaagaaa
caagaagaggaagaaaagaaggaaccagaaattattccggtttcatttgataaaccagaa
acacttaaagttaagcaaacggctattgcggcagcattgtacagtggcatgcagtgtagt
tcttgtggtgccagatttgcaccagaattagcaactcggtatagtcatcatttagattgg
cactttaggcaaaacagacgagaaagagattctgcaaggaaggctcattcacgaccttgg
tattatgatgttagtgattggatacagtttgaagaaattgaagatttagaagatagagta
caaagttggtttgaaacggaaaaacagacggctgatacggaaggtatcacggccgaggat
tctcctcaagaagcctcacagcctagtgttcccactggaactgatgaggattctagatgc
caagtatgccatgatgcatttgaacaattttataatgaagaaaaggaagagtggcatcta
agaccagcaattaactttgaaggaaagaattatcacccattgtgtcttgatgattacaag
agagctttggaaaaatctgcgcttgaagaaacaatagaggaaatggaggatgaaaaaaag
gagagctcagatgaaacattcgctgaagaaaataagactgatgaattaagtatggaagca
ttaaaagctgaatttgaaacagtacaaccgtcggatgaaataatagaagataaggtaccg
gaagactctactgaaatggagactaatgaggaggaaactataattgaagataatgcagat
attgaacaaaacgaaaaaatggaagaacaagaattagaatgtagtaataaggaggatgtt
gatatggaaagtatagaaaaagaagattcagtcgaaacagaaataccagaaacagaaaat
gtggataaatcctttgaaaatattaaaattaaagaagaaccaattgacgaacctgaggaa
caattagaagtggaacatttcgattttactaacatagaaattaaagaagaacctattgag
caggaaccagatcctgaagaaagtataataactgaacctgcaacggttgatacaacatac
gcagctgtgaagagttctatagacgggaatgtagaattggattctacgcctgcggcgatg
ccagcggctccatctcgaattaaaatcaatattacaaaaccattgtgtatcaataaagag
ccagaagattcaaaggaaaaagaaaaacctataattgagacacctactgaagaaataata
gaacctttggtgcctgcttctatcaaacctactttgcaaggtagaaaactttcaaattta
cctcctgtggaaagagggcaagagttatcaggactctgctcaattatgtaa
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integrated database retrieval system
