Bombus impatiens (common eastern bumble bee): 100746177
Help
Entry
100746177 CDS
T04362
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bim
Bombus impatiens (common eastern bumble bee)
Pathway
bim03013
Nucleocytoplasmic transport
bim03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bim00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100746177
03015 mRNA surveillance pathway
100746177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bim03019
]
100746177
Enzymes [BR:
bim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100746177
5.6.2.5 RNA 5'-3' helicase
100746177
Messenger RNA biogenesis [BR:
bim03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100746177
mRNA cycle factors
Common to processing body (P body) and stress granule
100746177
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
ATPase
NPHP3_N
SRP54
AAA_16
AAA_22
nSTAND3
AAA_10
AAA_7
AAA
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
100746177
NCBI-ProteinID:
XP_003487865
UniProt:
A0A6P3UQC0
LinkDB
All DBs
Position
Unknown
AA seq
1119 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEETDLIGADTQGSEFDFTDFTLPSPSQTQASQHDAAQSQPNQ
PVQVNGTSGSSSLELKISGAAQSLAELQFEEEEEEAYYNRDLPEHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDHEQWKPLIEDRSFLAWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECVSNFVVDFIWKSTSFDRMQLALRKFAVDDTS
VSGYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGAQVNGTQNHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGTALSK
NKQGPRMGKLSQSEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVG
EFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgacgcatacggacccagcagtcagactctgacgtttctagacaccgaagaa
actgatttaattggtgcagatacacagggtagcgaattcgacttcactgacttcacgtta
ccctcaccgagtcaaactcaggcctcgcaacacgatgctgcccaaagtcaacctaaccaa
cccgtacaggttaatggaacaagtggcagctcgtctttggagttgaagatatctggagca
gcacaaagtcttgcggaattgcagtttgaagaagaagaagaggaggcatattacaatcgt
gatttgccagaacatgcatgtaaatattgtggtattcatgaagcatcttgtgttgttatg
tgcaatgtttgccgcaagtggttctgtaacggacgtggaaatacatctggttctcacatt
atcaaccaccttgtcagagctaaacataaggaagttactttacacagagatggtcctttg
ggggaaactgtccttgagtgttactcttgtgctgttaggaatgtcttcgttcttggcttc
attcctgcaaaagcagattctgttgttgtattactctgccgccaaccatgtgcagctcag
agttcattgaaggatatgaattgggatcacgaacaatggaagccattgatagaagaccga
tcctttttagcttggttagttaaaattccatcagaacaggaacaattacgtgccagacaa
atttctgcccaacaaatcaataagttagaggaattatggcgagacaatgttgacgcgacc
tttcaagatcttgagaaacctggtgtagatgaagaaccgcaacaagtacttttgcggtac
gaagatggataccagtatcagaacatatttggccctctcgtaaaattagaagccgattat
gataaacgtttaaaggaatctcaaacgcaagaaaacatcgaagtacgttgggatgttgga
ctaaacaaaaagacaatcgcctatttcatgttagcaaaaacagacggcgatatgaaattg
atgcacggcgatgaactaagacttcgctacttgggtgaacttcacaagccttggtctgga
attggacatgtaatcaagatccctgataattatggagaggaagtagggatcgaattgaaa
aataattctggcgccccaacagagtgtgttagtaacttcgtcgttgattttatttggaaa
agcactagtttcgatcgcatgcagttagcgttgcggaaatttgctgtggacgacacttct
gtatccggttacatataccatagattgttaggacacgaggtggaagaagttttgtttcgt
tgtcatcttcctaaacatttcagtgctccgaatctgccagacttaaatcgttcacaagta
tatgccgtgaaacacgctgtacaaagacccttgtctctaattcagggaccgcctggcacg
ggaaaaactgtaaccagcgctacgatagtttatcaacttgtcaaacaaaacggtggtcct
gtattagtatgtgctccttcgaacacggctgtcgatcaactaacagaaaagatacacaaa
tcgaatttaaaggttgtgagactctgtgcgaagtcacgagaagcaattgattcaccagta
agctttcttgccttgcataatcaaatcaagaacatggagacgaatactgaattgcaaaag
ttgcaacaactaaaggatgagactggtgaattgtctagcgttgacgaaaaacgttataga
ttactaaagaaagcagcagaaaaagaattattagaggcagctgatgtaatctgctgcacc
tgtgttggagctggtgatccaaggttacatagacttaaatttcactcaattcttattgat
gagagtatgcaagcaacggagcctgagtgtatggtaccggttgttcttggagcaaagcaa
ctaatccttgtcggtgatcattgtcaattagggccagtagttatgtgcaagaaagctgcc
agagcaggtttatcacagtctctttttgaaagattagtagtattgggaattagacctttc
agattggaagtacaatatcgtatgcatccagatctatcacgattcccatcaaactttttt
tatgagggctctttgcaaaacggcgtatgcgcggacgagaggaaattgttgaaaattgac
tttccttggccagcacctgacaaacctatgtttttctacgttacacaaggtcaagaagaa
attgcaggaagtggtacatcatacttaaatcgaacggaagcatcgaacgttgaaaaaata
gcaacaagatttttacgttgtggagtaaaacctgaacaaattggagtaataactccgtac
gaaggtcaacgagcttatttagtgcaatacatgcaataccaaggatccttgcactcgaaa
ctgtaccaggaaatcgaagtcgctagcgtagatgctttccagggcagagaaaaggatata
ataattatgtcctgcgttcgatcgaacgaacatcaaggtattggatttctgaatgaccca
cgaaggttaaacgtcgcgttaactcgcgcgaaatacggaatcataatcgtaggaaatcca
aaggtattgtcgaaacagccattatggaatcatctattaagtttttataaggaacagaaa
gtcctcgtagaaggaccactgaacaatcttaaagaatctatgattcaattcgccaaacca
aagaaactcgtcaatgctgctaatccaggctctcactttatgtctacgtcgatgtacgat
gcaagagaagctttgatcccaggttcggtatacgatagatcaggtgctcaggttaatgga
acgcagaatcataatccttattaccaaaggaacgtacctttagatatcttcagcagaacc
cacgacactattagttacattagcccagaaagagctcaagcagcgatgaataatgtacca
gttccagtgggaatgttcatgaatatggcacacgtaccaccacggttctataatcagcat
cagcaggccctacaggctagacaaaaccaacgtaatcggcgaggtacagctttatcgaag
aacaaacaaggcccacgaatgggtaaactaagtcaatcagaacagaatactcagccatat
agccagccaggattaccgttaacacaaggcacgacgcaaggtatgtcacaaccaggtttc
agcctttctcaacccgggctgagtcaagcggaactttctcaagattcgttcgctgtcgga
gagtttcaatcacagatggacggattattatcacaagattcaacttatcagggtgatcga
agtggtttttatcaatccggacagtcacaagccgggggacaattctcccagccatattga
DBGET
integrated database retrieval system
