Bombus impatiens (common eastern bumble bee): 100747989
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Entry
100747989 CDS
T04362
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
bim
Bombus impatiens (common eastern bumble bee)
Pathway
bim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100747989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bim03019
]
100747989
Enzymes [BR:
bim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100747989
Messenger RNA biogenesis [BR:
bim03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100747989
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
OMP_b-brl
RRM_NFXL1
Motif
Other DBs
NCBI-GeneID:
100747989
NCBI-ProteinID:
XP_003494666
UniProt:
A0A6P3DXR3
LinkDB
All DBs
Position
Unknown
AA seq
821 aa
AA seq
DB search
MEVTSLNFQEVLVELDEVIKSATFLAIDGEFTGLNSGPDAGAFDTPAQYYANLRSGSMDF
LLIQFGLSVFTFNTQTQKYNQRSYNFYVFPRPLNRTAPDLRFMCQTSSMSFLASQEFDFN
KLFKLGIPYLTASEEEKLIKRLEEKQKIRDETLEILPITDVERPQIEDICRKMDEFITSE
EEELVIDKCSAFIRRLVYQEAKLRWPNKLRIESKMENFGCNLVVQRLGTKEEEEQREIEK
REKEREEIQHAVGLSILMRKISDSGKLLVGHNMLLDLCHIIHQFFGYLPESYLEFKSLLH
GLFPRILDTKIICHSQQFKENVPSSNLGILLETVSKSPFKITEVEPIDGRSYSTLTEKCH
EAGYDAYITGICFIALSNYLGSLQNPEVPIVLSDSSLLDPFLNKLLIARLKDIPYINLVG
EDPNPNRDHILHITFPKEWRFNDISQLFSPFGGVHVSWLNDTSAYIGLHRRDQVNAVMKI
LGKTNTYKIQRYADYQASLGVTVGAGDRKRKLSSYEAVSPKKGENSVPTNGVKTTKDDDG
WEVATGNDPELSSESIIPCSYPHERSRATSRPRGSYHEAVEPLLLEPMKVEQKVKLKNSL
SLPTDFQNERKKDAVPKYTIMKRNAGSDNDNKVDDTREVSKNTENKSSNTAKDDRHNSLI
LSNRSCKPGKTKKYNSNKGTSQQSVSMQIGSCSNKLSERKSSVSTKYKESEASVESSFSL
KKTSSTASSPSASPHLGNRAKKQSKTKPIVVEKFHSSKNTLALDKKRFLSNDKKQNDSEL
FFDPSDASRIEQRFSTGKCLFIMLAKIFTIIFLYYIAIKTD
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgacttctttgaattttcaagaagtccttgtggaattggacgaagttataaaa
agtgcaacattccttgccattgatggtgaatttacaggactgaattcagggcctgatgct
ggtgcctttgacacacctgctcagtattatgcaaatttgagatcgggatcaatggatttt
cttctaatacaatttggcctttctgtatttacattcaatacacaaactcaaaagtacaat
caacgatcatacaatttttacgtttttccgcgccccctaaatcgtacagctccggatttg
agattcatgtgtcagacatccagtatgtcgtttttagcatcgcaagaattcgacttcaat
aaacttttcaaattaggcattccttacttaacagcaagcgaagaagaaaaattgatcaaa
cgattggaggagaagcaaaagataagggatgaaacattagagattttgcctattacggat
gttgagaggcctcagatcgaagatatttgtagaaagatggatgaattcatcacttctgaa
gaagaagaactagtgattgataagtgtagtgcttttattagacgactagtttatcaggaa
gcaaagctgaggtggccaaataaattgaggattgaaagtaaaatggagaattttggatgt
aatctcgttgtacaaagattaggaactaaagaagaagaagaacaaagggagattgaaaaa
agagagaaagaaagagaagaaattcaacatgcagttggattaagtatactcatgagaaaa
atttcagattctggaaagttattagttggtcataatatgttactagatctctgtcatata
atacatcaattttttggatatttgccagaatcatatttggaatttaagtctcttcttcat
ggtctatttccaagaattttagatacaaaaataatttgccattcgcagcaattcaaggaa
aatgtaccatcgtcgaatttaggtatattgctagaaacagttagtaaatcaccgtttaaa
attacagaagtggaacctatcgatggcagaagttattcaacgctgacagaaaaatgtcac
gaggccggttacgatgcatatataactggaatatgtttcattgcattgtctaattatctt
ggttccttacaaaaccccgaagtgccgatagttttatcggattcatcattactcgaccct
tttctaaacaaactcctcatagcaagattgaaagatattccgtacataaaccttgtcgga
gaagatcctaatccaaatagagatcatatattacatataacattcccaaaagagtggagg
tttaatgatatatctcaattgtttagtccgtttggaggtgtgcatgtgtcatggttaaat
gacacgtctgcatatataggactacaccgtcgagatcaagttaacgcagtaatgaaaatt
ctaggtaaaacgaatacctataagattcaaaggtatgctgattatcaagcttctctaggg
gtgaccgttggcgcaggagatcgtaaacggaaattatcctcgtatgaggctgtctcgccg
aagaaaggggaaaactccgtgccaacgaacggcgtgaagaccactaaggacgacgatggc
tgggaagtagccacaggtaatgaccccgaattatcatcagagtccatcatcccttgctcc
tatcctcatgaacgatcgagagccacgtcgaggccccgtggaagttatcacgaggccgtc
gagccgctcttattagagccaatgaaggtcgagcagaaagtcaaattaaagaacagcctt
agtttgcctacggatttccagaacgaacgaaaaaaggacgcggtgccgaaatacacgata
atgaaacgaaacgcgggatctgataacgataacaaggtagacgatacgagggaagtttca
aaaaatactgaaaataaatcgtcgaacacggccaaagacgatcgtcataattcgttgata
ttaagcaatcgtagctgcaagccgggaaaaacaaagaaatataattctaacaaaggcacg
agtcaacaatctgtgtcaatgcaaattggttcgtgtagtaataaattgtctgagagaaag
tcatccgtttcgacaaagtataaagaaagtgaagcgtcagttgaatcttcgttttccttg
aaaaagacgtctagtacagcttcttccccgtcagctagtcctcatctaggaaaccgggcg
aaaaaacaatcgaaaacgaaaccgatagtagtagaaaaattccatagctcgaaaaatacc
ttggcgcttgataaaaaaagatttttgtcaaatgataagaaacaaaatgattcagaattg
ttctttgatccatctgatgcaagtcggattgaacaacgattcagtacaggcaaatgtttg
tttatcatgttagcaaaaatttttactataattttcctttattacattgcgattaagacg
gattga
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