Bombus impatiens (common eastern bumble bee): 100748868
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Entry
100748868 CDS
T04362
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
bim
Bombus impatiens (common eastern bumble bee)
Brite
KEGG Orthology (KO) [BR:
bim00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bim04147
]
100748868
00535 Proteoglycans [BR:
bim00535
]
100748868
00536 Glycosaminoglycan binding proteins [BR:
bim00536
]
100748868
Exosome [BR:
bim04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100748868
Proteoglycans [BR:
bim00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
100748868
Glycosaminoglycan binding proteins [BR:
bim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100748868
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
RH_dom
Motif
Other DBs
NCBI-GeneID:
100748868
NCBI-ProteinID:
XP_012243227
UniProt:
A0A6P3UXC4
LinkDB
All DBs
Position
Unknown
AA seq
1178 aa
AA seq
DB search
MRPRLQWLIFVLFCVTRVNADFFNEKKELEYDLLQASVALTDDNNLYIDDGLDGFPSFGF
RPGSEVKQPYRLYLPEKLPAEFTLVATFKPTSFRTSYLFAVLNPFETVVQLGIRISDGPG
TNQNVSLVYTNSDLHSHSEEVAKFTVPKLTKKWSKIVIRVSTTDVTLYLNCHEMAKQRVT
RIPLELMFDTASTLYIAQAGPHIQEKYDGLLQSLKLYSGHPADLVRCTADFNFNPDEDLG
SGDINNDLIDGLEDVDTNVPDIGRDDDEDRSEESNPPPFITPPPPNPDYKGPKGEKGDKG
DKGESVRGPPGPPGPPGQDEGPPGKKGEPGTCTCNATALMASFTMPKMIQGPKGEQGVPG
QEGKQGQMGLTGAAGPPGERGLEGPQGPKGDKGDVGIAGPEGPQGQKGEPGRDGIPGEKG
AQGPPGPPGKGEFSGYDPSWKPRGIYRTEGITMRPGLPGQKGEAGLPGSPGPKGETGIAG
AKGYKGEPGHKGAKGDHGKEGPRGIQGFKGEPGAPGAPGLPGAPGENGRPAEKGDKGDTG
PEGKPGPAGVPGPPGLPGLSGSGGVNVGEAMLREKGDKGESGARGYKGDKGTKGEKGDKG
DSGPAGIPGVNGIQGPQGNKGEPGKDGVPGAPGVVGAKGEKGERGPPGATAIASSGDYIT
IKGEKGAEGKRGRRGRPGPPGPVGPPGKTGAMGEIGLPGWANSMKGRPGTPGLPGPVGPV
GPKGEKGEPGTPSPYGVSVGIKGDKGDDGFPGIPGQPGRDGQRGPPGPPGPPGPPSQGNY
IPVPGPPGPPGPPGPPGLSLIGQKGEPGIGRSHIFGERDYYGVRQVPKNIKDFKHDMFFG
TLQGPRTSLDELKALRELKQLKELKEHLGAATTATRGPLESTTKIVPGAVTFQNTEAMTK
MSAVSPVGTLAYIIDEQALLVRVNNGWQYIALGSLLPITTPAPPTTSPPPVNPPFEASNL
INQIPVKADGTGWYPRMLRMAALNEPFTGDMHGVRGADYACYRQAKRAGLRGTFRAFLSS
RVQNVDSIVRLGDRDLPIVNIKGDVLFNSWKEMFNGNGAYFSQNPRIYSFNGKNILTDFA
WPEKVAWHGSHKLGDRAMDTYCDAWHSSSSDRYGLGSPLTGGRLLEQVRYSCDNKFALLC
IEVTSETTRRRRSVEVSEDEDEMSENDYKEYLDSLMEN
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgcggcctagattgcagtggttgatattcgtcctgttctgtgtgacgcgcgtcaacgcg
gactttttcaacgagaaaaaagagctggaatatgatttacttcaagcttccgtggcatta
acagacgacaataatttgtacatcgacgatggtctcgacggatttccaagttttggcttc
cgacctggctccgaagttaaacagccgtatcgattatatttgccggaaaaattgccagca
gagttcactttggtggcaacttttaagccgacgtcatttagaaccagttatctcttcgcc
gtcctaaatcctttcgaaactgttgtgcaattaggcatccggatatccgatggtccagga
acaaaccagaatgtctcactggtctacaccaattctgatttgcattcgcattcggaagag
gtggcgaaattcacggtgccgaagttgacaaagaaatggtcaaagatcgtaatcagagta
tcgacgactgatgtcaccttatatctaaactgtcacgaaatggccaagcaacgagtaacg
aggattcctctggagttgatgttcgacacagccagcacgttgtacatcgctcaagctggg
cctcatattcaggaaaaatacgatggtctactgcaatccttgaagctctattccggacat
ccagcggatttggtaagatgcacggccgacttcaacttcaacccagacgaggatctcggc
tcaggcgatatcaataacgacttgattgacggtttggaagacgttgacactaatgtgcca
gacatcggacgagacgatgacgaagacagaagcgaggaaagcaatccaccgccattcatc
acaccccctcctcccaatccggactacaaagggccgaagggtgagaaaggcgataaagga
gacaaaggagagagcgttaggggacctccgggtccacctggaccacctggtcaagacgag
ggtccaccagggaagaaaggagaacccggcacgtgcacctgcaatgcaacagccttgatg
gcatcctttacgatgccaaagatgatccaaggaccgaaaggagaacaaggagtgccgggg
caagaggggaaacaaggccaaatggggctgacgggtgcggctggaccacctggagagaga
ggactggaaggaccacagggtcctaagggtgacaaaggagacgtgggaatagcaggacct
gaaggtcctcaaggacagaaaggggaacctggtcgtgatggaatacccggagagaagggc
gctcaaggacctccaggaccgccaggaaagggtgaattttctggatacgaccccagttgg
aaacctcgaggcatttataggacggagggcatcaccatgagaccaggactgccaggacag
aaaggcgaagccggacttccaggaagcccaggaccgaaaggggagacaggaatcgctggt
gccaaaggatacaaaggcgaaccagggcacaagggtgcaaaaggcgatcatggaaaagaa
ggtccacgaggaattcaaggattcaagggtgaacctggtgctccgggagcaccggggctt
cctggcgcaccaggtgagaatggaagaccagcagagaaaggtgacaaaggagacacagga
ccagaagggaaaccaggccctgcaggtgtacctggaccaccaggattgcctggattgagc
ggctctggcggagtaaacgttggagaagcgatgttaagggaaaagggcgataagggcgag
agtggtgcacgaggatacaaaggagataagggcaccaaaggcgagaagggagacaaaggt
gattctgggccagccggaattcctggtgtgaatggtatccaaggaccgcaaggcaacaaa
ggcgagccagggaaggacggagttcccggagcaccgggagtcgtcggtgcaaagggcgaa
aaaggtgagagaggtccgccaggagctacagctatagcgagctctggagactacatcact
atcaaaggtgaaaaaggagcagaaggcaagagaggtagaagagggcgtcctggaccacca
ggaccggtcggcccacctgggaagacgggagcgatgggagaaattgggttacctggatgg
gcgaactccatgaaaggtcgtcctggaactcccggacttcctggacctgttggaccagtg
gggcccaagggagaaaaaggagaacccggtacaccgagcccttacggagtctctgtcggc
atcaaaggcgataagggagacgatggtttccctggaattcctggacaacctggaagagac
ggtcaaagaggacctccagggccacccggaccacctggaccaccgtctcaaggaaactat
attccagttccgggtcccccggggcctcctgggccaccaggaccacctggactatctttg
attggacagaaaggagaaccaggaattggtagaagtcacatctttggcgaaagagactat
tacggagttagacaggttccaaagaatataaaagattttaaacacgatatgttctttggc
acgctgcaaggacctagaactagtctagacgaattgaaggctctgagagaactaaagcaa
ctgaaggaacttaaagaacatttaggtgctgcaaccaccgcaactagaggtcccttagaa
agtaccacgaagatcgtaccaggagctgtgacttttcaaaataccgaagctatgaccaaa
atgtctgccgtgagcccagttggaacattagcttatatcattgacgaacaagctctgctc
gttagagtgaacaatggctggcaatacatcgcattgggttcgcttctaccaataactaca
ccagcaccaccaaccacgtcaccgcctccggtgaatccacctttcgaagcttccaacctg
atcaaccagatacccgtaaaagcagacggaacagggtggtatccacggatgttacgaatg
gctgctttgaacgagccatttacgggagacatgcacggtgtacgtggagctgactacgct
tgttatcgacaagcgaagcgagctggtttgaggggtacgttccgagcattcctcagctcc
agagttcaaaatgttgacagcatcgtgagacttggggaccgtgatcttcctatcgttaac
ataaagggcgatgtacttttcaactcgtggaaagagatgttcaacggaaacggggcctac
ttctcgcaaaatccaaggatttacagtttcaatggcaaaaatatcctcaccgactttgca
tggccagaaaaggtggcatggcacggatcgcacaaattaggagaccgggcaatggacacg
tattgcgacgcttggcattcaagtagttcggatcgttacggattaggatcaccgttaact
gggggacgcctcttggagcaagttcgttattcctgcgacaacaagttcgcgctgctctgt
atagaagtaaccagcgagaccacaagaaggaggagaagcgtcgaagtttcggaggatgag
gacgaaatgtcggagaacgattataaggagtacttggattctctgatggaaaactaa
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integrated database retrieval system
