Brachyspira intermedia: Bint_1838
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Entry
Bint_1838 CDS
T01847
Name
(GenBank) Predicted hydrolase of the metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bip
Brachyspira intermedia
Pathway
bip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bint_1838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bip03019
]
Bint_1838
Messenger RNA biogenesis [BR:
bip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bint_1838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RMMBL
RNase_J_C
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AEM22454
UniProt:
G0EJQ8
LinkDB
All DBs
Position
2105629..2107542
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AA seq
637 aa
AA seq
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MNNNNDKIRIIPLGGVQEIGMNMTVIEYGNELLIVDCGFMFPRYHMLGIDYVIPDTSYLE
DKNIIGLILTHGHEDHIGAIPHFLRKFPDIPIYGSRLTLAFLRAKLNDYKNEYKDTKLYE
VEPRNKIQLGMNFDIEFIRVNHSIPDGVGIAITTPLGVIIHTGDFKIDLNPTTDKFIDLY
KFAEYGENGVLLMLADSTNCQRDGFSMSESVVQNNMTPLFAYEDGMIIVAVFASSIERIQ
DLVTAAKVNNKFVAFSGRSLIKFTKIAQDMGYLNLYDIVIPIDKINKYPREKIVCITTGT
QGEPYSSLSLIAAEAHKHIKVEDGDMVIFSSSVIPGNEMAVTRMINNLFDLGAKMVGEDK
KLLHVSGHASSEDLKLMYRLVKPKYFIPIHGEKRHLITHIKLVENLNGLDTKGFLLYNGD
VLEIDETLEAKITEPIEIRNIYVDGKGVGDLEESIFYDREQLSLNGVVVANVVAKKNAAG
QYDIKVDLESKGFTYTGGEKERIINKTEQLREEGISSAIEAVRKLLNRNKRTPSTIKYEV
REALRKKFIQIIGREPVIFVCLYMDHVYIEQSHSSNDDNDNIDKNNIENIEIENNNDEEK
EKCHTKKKKRIKKTVIKKNTSQIKRLKSKKKKAVKES
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaataataataatgataaaataagaatcatacctcttggcggagtacaagaaataggt
atgaacatgactgttatagaatatggaaatgaacttttaatagtagactgcggatttatg
ttcccaagataccatatgctaggtatagattatgttattcctgatacttcatatttagaa
gataaaaatatcataggacttatacttactcatgggcatgaagatcatataggtgctata
cctcatttccttagaaaattccctgatattcctatatacggttcaagacttactttggct
tttttaagagctaaattaaatgattataaaaacgaatacaaagatacaaaattatatgaa
gttgagcctagaaataaaatacaattgggaatgaattttgatatagagtttataagggtt
aatcatagtatacctgacggagttggaatagccataacaacaccattaggagttataata
catacaggtgatttcaaaatagatttaaaccctacaacagataaatttatagacctttat
aaatttgctgaatatggagaaaatggtgttcttcttatgctggcagattcgacaaactgc
cagagagatggtttttctatgagtgaaagtgttgtccaaaacaatatgactccactattc
gcttatgaagacggaatgattattgttgcagtatttgcaagcagtatagaaagaatacaa
gatttagtgactgcagcaaaagtcaataataaatttgtggcattctctggaagaagttta
atcaaattcacaaagattgcacaggatatgggttatttaaatctttatgatatagttata
ccaatagataaaataaacaaatatcctagagaaaaaatagtatgcataactacaggaact
caaggagaaccttattcttcactatctctaatagcggcagaggcacataaacatataaaa
gtagaagacggcgatatggtaatattctcatcaagcgttatacctggtaatgaaatggct
gttactagaatgataaataatctctttgatcttggggctaaaatggttggagaggataaa
aaacttcttcatgtatcaggacatgcttcaagcgaagatttaaaattaatgtatagatta
gtaaagcctaaatattttattcctatacatggtgagaaaagacatttaatcactcatata
aaattagttgaaaatttaaatggtttagatacaaaaggattcctactttataacggagat
gtacttgaaatagatgaaactttagaagcaaaaatcacagagcctatagagataagaaat
atatatgttgatggaaaaggtgttggagatttagaagaaagtatattctatgacagagaa
caattatcacttaatggagtggtagttgccaatgttgtagcaaagaaaaatgccgcagga
caatacgatataaaagtagatttggaaagtaaaggtttcacatacaccggaggagaaaaa
gaaagaattatcaataagactgaacagttaagagaagagggaataagctctgcaatagaa
gcagttagaaaattattaaatagaaataaaagaactccttctacaataaaatatgaagta
agggaagctcttcgtaaaaaatttattcagataataggaagagaacctgtaatatttgta
tgcctatatatggatcatgtttatatagaacaatcacatagcagtaatgatgataatgat
aatattgataaaaataatatagaaaatatagaaattgaaaacaataatgatgaggagaaa
gaaaaatgtcatacgaagaagaaaaagagaatcaagaaaacagtgataaagaagaataca
tcacagataaaaagattgaaatcaaaaaagaaaaaagcagtaaaagagagctaa
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