Brachyspira intermedia: Bint_1899
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Entry
Bint_1899 CDS
T01847
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
bip
Brachyspira intermedia
Pathway
bip02020
Two-component system
bip02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bip00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Bint_1899
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Bint_1899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bip03021
]
Bint_1899
Transcription machinery [BR:
bip03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Bint_1899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_3
HTH_21
DUF5703_N
Motif
Other DBs
NCBI-ProteinID:
AEM22515
UniProt:
G0EK49
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All DBs
Position
2180907..2182217
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AA seq
436 aa
AA seq
DB search
MINNSLSANTSIRTAIKNDLRLNYQTRVWLDVISLPAIELKEKIQKAMEENPFLEYDFND
NYSKSSSSKASSDINSIIENTIENNKESLFSHLKSQIDITFDDKKEIELAEQICSFINED
GYLTIESGEISNILNADIKQIDKIISIIKTFDPYGVAAKNINECLSIQLKMKKKEADDKE
IYDTAINIVENYLDELSKKNYEKIALNLNIEVNTVLKALKLIQTLEPYPAREYDTSSVKY
IVPELFIFKENENWIVKTDETFIPHLKISKKYIKLLDREESKDNINFLKEKKKEAESLIN
ASNDRKKTLLKIGEALLKFQINFFEYGKEFMKPLTLKDMSLEVNLSESTISRIANGKYLN
TVWGTFSIKYFFSRAVNGGLGSRGVKEIIKRIIENSQAKLSDEKIRLILKSEGIDISRRT
VAKYRKSMNIFSSRNR
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgattaataattctttatcagcaaatacttctataagaactgcaataaaaaatgattta
agactcaattatcaaactagagtatggcttgatgttatatcattacctgctatagagctt
aaagaaaagatacaaaaagcaatggaagaaaatccatttttggaatatgatttcaatgat
aattattcaaagtcttcttcttcaaaagcatcaagcgatattaattctataatagaaaac
acaatagaaaataataaagaaagtttattttctcatttaaaaagtcaaatagatattacc
tttgatgataaaaaagaaatagaacttgcagagcaaatatgcagttttataaatgaagac
ggatatttaaccattgaaagcggagagatatcaaatatattaaatgcagatataaagcaa
atagataaaataatttctataataaaaacatttgatccttacggggttgctgctaaaaat
atcaatgaatgtctttccatacaattaaagatgaaaaaaaaagaagctgatgacaaagag
atatatgatacagcaataaacattgtagaaaattatttagatgaattatcaaaaaagaat
tatgagaaaatagctttaaatttaaatatagaagtaaatacagtattaaaggctttaaaa
ttaatacaaacattagaaccctaccctgcaagagaatatgatacatcatctgttaaatat
atagtacctgaattatttatttttaaagaaaatgaaaattggattgtaaaaacagatgaa
acttttatcccccacttgaaaattagcaaaaaatatattaaactattagatagagaggaa
agtaaagataacataaacttcttaaaagaaaaaaagaaagaagctgaaagccttataaat
gcatctaatgatagaaaaaaaactttattaaaaataggcgaagctctgcttaaatttcag
ataaatttctttgagtatggaaaagagtttatgaagccattaactttgaaagatatgtct
ttggaggtgaatttaagcgaatctactataagcagaatagctaatggcaagtatcttaac
actgtttggggtacattttctataaaatattttttctctagagctgtaaatggcgggctt
ggttctagaggcgttaaagaaattataaaaagaattatagaaaactctcaggcaaaacta
agtgatgaaaaaatccgactcatacttaaaagcgaaggtattgatatttcgagaagaacc
gtagctaaatatagaaaaagtatgaatattttttcatcaagaaacagataa
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