Brachyspira intermedia: Bint_2035
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Entry
Bint_2035 CDS
T01847
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bip
Brachyspira intermedia
Pathway
bip03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bint_2035 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bip03400
]
Bint_2035 (mfd)
Enzymes [BR:
bip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bint_2035 (mfd)
DNA repair and recombination proteins [BR:
bip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Bint_2035 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
TRCF
Cas3-like_C_2
RecG_dom3_C
Fer4_20
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEM22651
UniProt:
G0EKZ5
LinkDB
All DBs
Position
2339693..2343427
Genome browser
AA seq
1244 aa
AA seq
DB search
MHNNESIYTELIERFSKSEEFLNFDIKTVKSLTGLKGGSDSLFFASLFNNNEESILIIKE
NESDAMLLSQSLNFYNIPNYYFPDYDTVPFTKMSPVTDIAQDRINILYKLINKEKCIIIT
TINAVTRKLPNRNDLKKLPIYLNVGDKLDLDNLRLTLYDLGYVIEREVAEKGTASVRGSI
VDVFSVEYDNPIRIELFDEEIESIRLFNIEDGRSFKSVENIIIYPVREAIYSDSAVSEFL
NNNEIEDELKDNITKRKYFAGSETLLPIFYNDLETIFDYFDYGYIFIDDALKLKNKLITI
IDTIKENFNDIDNMFTIIEDIYKLYIDNNYFSEIVKKSINISPFITDIDIYKFHFEEGVS
FKSRLTDFLDYVKEYREKDYLIILSTGHHDQALRFYKIMQDLSPTIITENEIEDEEKDSE
DKEITDNKEINNNDNLENSENNEDNKEIILEDTNKKEEIIKDYSKNENNFYIITTQASSG
FIKNDIKTIFIADWEVFGRKRKKVRKIPKVNKNLIETFVDLNVGDYAVHVNYGIGKYLGL
TRKMSNGKEKDYITLEYAKGDKLYIPVEQMNFVQKYISGHGEAPKLTQLGGSAWDKIKSK
AREDALATARELIKLYAIRSNIRGNVYGPDTQWQDDFEASFRYEETVDQLRAINDIKEDM
ESGKMMDRLVCGDVGFGKTEVAFRAVFKAIMAGKQCAILCPTTILSQQHYNNAKKRFEDF
PIRIEVLNRFVTSKQTKKNKELLKTGSCDLIVGTHMLLSKDVEFKNLGLIVIDEEQRFGV
KHKEALKKLRLETDVLTLSATPIPRTLNMALTGIRDISIIETPPLNRIPVKTFVTEFTED
AVVNAIERELKRDGQVFYLYNRIDTIESFALMIKKLCPKARICVAHGRMTGHQLEKIMGD
FINHKYDILVSTTIIENGIDIPNANTILIDNANKLGLSELYQLRGRVGRSDREAYAYMFY
PSDLALTEVAYKRLEAISEHTDLGAGFKIAMRDLEIRGAGNILGKEQSGMIYQVGYELYT
QMLEEAANEYKGEIKEVTFDTVIDLKHNLFIPDSYIADSKEKISAYKLIMRSQSDEDIEY
AKEFMIDKYGKLPKELEDIFDIAKLKIILKRMRILSVIEGQYNIYLKLDKLSKIDTDKLV
KLINTKNSGVYFDKDNLNQLIIPVIHEKENDIEWKLEKIKNVILEIEGENYAPDTNSKND
KNINDNQEEHSKMSVAEANIKNNKNNRKRTVSRRSPKLIKVNKK
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atgcataataatgaatcaatatatactgaattaatagaaagattttcaaaaagcgaagaa
tttttaaatttcgatataaaaactgtaaaaagtttaacaggacttaaaggcggaagcgat
tctttatttttcgcatctctttttaataataatgaagaaagtattttaataatcaaagaa
aatgaaagcgatgctatgcttttaagccaatctttaaatttttacaatatacctaattat
tatttccctgattatgacactgttccttttaccaaaatgtctcctgttacagatatagca
caggatagaataaatattttatataaattaataaataaagaaaaatgtatcataataaca
actataaatgctgtaactagaaaattacctaatagaaatgatttgaaaaaactgcctata
tatttaaatgtaggcgataaattggatttagataatttaagattaacattatatgattta
ggatatgttatagagagagaagttgctgaaaaaggcactgcttctgtgagaggaagtata
gtagatgtattttctgtagaatatgataatcccattagaatagaattatttgatgaggaa
atagaaagtataagactattcaatatagaagatggaagatctttcaaaagcgtagaaaat
ataattatttatcccgttagagaagctatttacagtgattcggcggtaagcgaattttta
aataataatgaaattgaagatgaactaaaagacaatataacaaaaagaaagtatttcgcc
ggaagtgaaacattactgcctattttttataatgatttagaaactatatttgattatttt
gattatggttatatattcattgatgatgctttaaaattaaaaaataaactcataactatt
atagatactataaaagaaaattttaatgatatagataatatgtttactataatagaagat
atttataaactttatattgataataattatttttctgaaatagtaaaaaaatcaataaat
atatcaccttttataacggacatagatatatataaatttcattttgaagaaggtgtttct
tttaaatctagattaacagattttcttgattatgtcaaagaatatagagaaaaagattat
ttaattatactttctacaggacatcatgatcaggcattgagattttataagataatgcag
gatttatcgcctactatcataactgaaaatgaaatagaagatgaagaaaaagattctgaa
gataaagaaataactgataataaagaaataaacaataatgataatttagaaaattctgaa
aataatgaagataataaagaaataattcttgaggatactaataaaaaagaagaaataata
aaagattattcaaaaaatgaaaataatttttatataataacaactcaggcatcatcaggc
ttcataaagaatgatataaaaacaatattcatagcagattgggaagtatttggaagaaaa
agaaaaaaggtaagaaagatcccaaaagttaataaaaacttaatagaaacatttgtagat
ttgaatgttggagattatgctgttcatgttaattatggtataggaaagtatttaggacta
acaagaaaaatgtccaatggtaaagaaaaagattatatcacattggaatatgccaaagga
gataaactttatatacctgtagagcaaatgaacttcgtacagaaatatatatccggtcat
ggagaagccccaaaattaacacagttaggcggaagtgcttgggataaaataaagagcaag
gcaagagaagatgcattagctactgcaagagaattaataaagctttatgccataagatcc
aatatccgaggaaatgtttatggacctgacactcaatggcaggacgattttgaagcttca
tttcgttatgaggaaacagttgatcagttgagggctataaatgatataaaagaagatatg
gaaagtggcaagatgatggataggcttgtatgcggcgatgtaggatttggaaaaacagaa
gtcgcattcagagctgtatttaaagctataatggcaggaaaacaatgtgctatactctgc
cctactacaatattatcacagcagcattataataacgctaaaaaaagatttgaagacttc
cctattagaatagaagttttaaatagattcgttacaagcaaacaaacaaagaagaataaa
gaattattaaaaacaggttcatgcgatttgatagttggaactcatatgcttttatcaaaa
gatgtggagtttaaaaatctaggacttatagttatagatgaagagcagagatttggagtt
aaacataaagaggcattaaaaaaattaagattagaaactgatgttcttacactttcagct
actcctatacctagaactttaaatatggctttaacaggaataagagatataagcataata
gaaactcctccattaaacagaatacctgtaaaaactttcgttacagagttcacagaagat
gctgttgtaaatgcaatagaaagagaattgaaaagagatggacaagtattttatctttat
aacagaatagatactatagaatcatttgcacttatgataaaaaaactttgtcctaaagcc
agaatatgcgttgcccatggaagaatgacaggacatcagcttgaaaaaataatgggcgat
tttattaatcataaatatgatatattagtttccactaccataatagaaaacggaatagat
atacctaatgccaatactatactaatagataatgcaaataaattaggattatccgagctt
tatcaattaagaggaagagtgggaagaagcgacagagaggcttatgcttatatgttctat
cctagcgatttagcattaacagaagttgcatataaaagacttgaagctatatccgaacat
acagatttaggtgcgggttttaaaatagctatgcgtgatttagaaattagaggtgcagga
aatattttaggtaaagaacaatccggtatgatatatcaagttggttatgaattatatact
caaatgctagaagaagctgcaaatgaatataaaggcgaaataaaagaagtaacattcgat
actgttatagacttaaagcataatttatttattcctgattcttatatagccgattcaaaa
gaaaaaatatccgcttataaattaataatgcgttcacaaagcgatgaagatattgaatat
gctaaagagtttatgatagataaatatggcaaacttccgaaagaattagaagatattttc
gatattgccaaattaaaaattatattaaaaagaatgagaatattatctgttatagaagga
cagtataatatatatcttaaacttgataaactctcaaaaatagatactgacaaacttgta
aaattaatcaatacaaaaaattcaggagtttattttgataaagataatcttaatcaatta
ataataccggttatacatgaaaaagaaaatgatatagaatggaaattagaaaaaataaaa
aatgtaattctagaaatagaaggtgaaaattatgcaccagatactaattcaaaaaatgat
aagaatataaatgataatcaagaagagcattctaaaatgagcgtcgcagaagctaatata
aaaaataataaaaacaatagaaaaagaactgtatcaagaagatcgcctaaattaataaaa
gtaaataaaaaataa
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