Brachyspira intermedia: Bint_2348
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Entry
Bint_2348 CDS
T01847
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bip
Brachyspira intermedia
Pathway
bip03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bip00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Bint_2348 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bip03021
]
Bint_2348 (rpoC)
03400 DNA repair and recombination proteins [BR:
bip03400
]
Bint_2348 (rpoC)
Enzymes [BR:
bip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Bint_2348 (rpoC)
Transcription machinery [BR:
bip03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Bint_2348 (rpoC)
DNA repair and recombination proteins [BR:
bip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Bint_2348 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AEM22954
UniProt:
G0EMR3
LinkDB
All DBs
Position
complement(2678682..2682884)
Genome browser
AA seq
1400 aa
AA seq
DB search
MQFSNFDQIKISIASPQVMREWSYGEVKKPETINYRTLRPERDGLFCEKIFGTTKEYECY
CGKFKSIRYKGVVCDKCGVEVTHFKVRRERMGHIELAAPVAHIWYYRNTPSRIGLLLNMN
IAHLRSVLYFERYVVIDPGDSSYSKGDLLTEDEYNEALDRYGDNIRIGIGAEGIRDMLKD
LDMDEEIRKLREEMIKKREKSDRRLRKRLEIFEDFKASGNDPTWMILDVVPVIPPDLRPM
VQLDGGRFATSDLNDLYRRVINRNIRLRRLLVLRAPDIIIRNEKRMLQEAVDALFDNSRR
KKVVKGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVAGPRLKMHQCGLPKKM
AVELFKPFIMKKLVEINSAHNIKSAKRFVEEGREEVWGVLEDIAKEHPVLLNRAPTLHRL
GIQAFEPVLVEGKAIQLHPLVCHAYNADFDGDQMAVHTPLSAEAQIEAWTLMLAPHNILN
PANGEPIVNPTQDIVLGISYLTKLRTGSKGEGKMFSSPKDALLAYDNNLVELESRIKVLM
KNKDGEEEFIETSVGRLKFNEVIPEDFRYQNRDFNSKDLAKFIHEVYLKHGTAVTVNMLD
DIKELGYQSATVFGSTISIADILIPPMKKHEIEEATKQVEFIENQYMNGIITTDEKKQKV
MDLWTTVEGRITEAMMDNLRQDQDGFNPVYIMADSGARGSKQQIRQLASMRGLMAKPSGE
IIELPIISNFKEGLTVQEYFISTHGARKGLADTALKTSSAGYLTRKLVDVAIGVVVSEHD
CGTVKGIAIEAIKNGDEIKKSLKERVVGFFTSEHIYHPVTKELICSANTEITEELGDLIE
KSGIEKISIRHPLTCESRMGVCQKCYGRSLSTNNLASIGEAVGVVAAQSIGQPGTQLTMR
TFHIGGVATQMVEENEIKVNYPIYIEQFSNYVVQPNGVKITARKGDLIIRRVLEKWEKST
LKDILTEQNTKVLIGDVIATLKDGTEIKATHNGTFKITDDDKYIMITGDKHTIVIKVGSE
YKVDEHVFIEPNTVIASFDTYNEPIISEKAGIVRWQDIIPGRTLVESIDDQTGNVTNIIQ
EFKDASMQPKILITGEGDPFETDIPNGAQLLVENNQRVEIGEVIAKTTRIQQKSRDITGG
LPRVQELLEAQKPKDTAIIAGIDGEVEIGGSHKGKKVVKIRNEFDETKHLVPHGKMLLVR
NGDQVKTGTQLCAGKINPHDILETQGDLALQTYLLEEIQTVYNQQGVGINDKHFALIIRQ
MLRRLEITDPGDTKYIVGQYVDKYEFEEENRRYEEAGGSPASGKPVLLGLTKAALNTESF
ISSASFQETTKVLTNAAIKGKVDKLLGLKENVIIGHLIPAGTGVKLYNKLHVYNKQSGDL
DKKDNIDNSAKEEEVMQITV
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttcaaactttgaccaaataaaaattagtatagcaagcccacaggttatgaga
gaatggagttatggtgaggttaaaaaacctgaaactatcaactacagaactttaagacct
gaaagagacggacttttttgtgagaagatattcggaactactaaagaatatgaatgttat
tgcggtaaattcaaaagtattcgttataagggcgtagtttgtgataaatgcggtgttgaa
gttactcatttcaaagttagaagagagagaatggggcatatagaattagctgctcctgtt
gctcatatttggtactataggaatactccttcaagaatagggcttcttttaaacatgaat
attgctcatttaagaagcgtactttattttgaaagatatgttgttatagatccaggtgat
agcagttattctaaaggcgatcttttaactgaagatgaatataatgaagctttagataga
tatggcgataatataagaataggtataggtgctgaaggcataagagatatgcttaaagac
cttgatatggatgaggaaatcagaaaactcagagaggaaatgattaaaaaacgtgaaaag
agtgatagacgtttaagaaagcgtcttgaaatctttgaagattttaaagcgagtggtaat
gatcctacttggatgatacttgatgtagttcctgtaattcctccagatttaagacctatg
gttcagcttgacggcggaagattcgctacttcagacttgaatgacctttatagaagggtt
ataaacagaaatattcgtttaagaagattattagttttaagagctcctgatattatcatc
agaaatgaaaaaagaatgttacaggaagctgttgatgctttatttgataacagcagaaga
aagaaagttgttaaaggccctggaaatagacctttaaaatctctttcagatatgcttaaa
ggtaagcaaggacgtttcagacagaaccttttgggtaaacgtgttgactattcaggacgt
tctgttattgttgctggtcctagacttaaaatgcatcaatgcggacttcctaaaaaaatg
gctgtagagttattcaagcctttcataatgaaaaaattagttgaaattaattcagctcat
aatataaaatctgctaagagattcgtagaagagggcagagaagaagtttggggagtatta
gaagatattgctaaagagcatccggtacttttaaacagagcaccgactcttcacagactt
ggtattcaggcatttgaacctgtacttgttgaaggaaaagcaattcagcttcacccatta
gtttgtcacgcttataacgctgacttcgacggcgaccagatggctgtacatactccgctt
tctgctgaggctcagattgaggcttggactttaatgcttgctcctcataatatattgaac
cctgctaacggtgaacctattgttaaccctactcaggatatagtacttggtatcagctat
cttactaaattaagaacaggcagtaaaggtgaaggaaagatgttctcatctcctaaagat
gctttacttgcttatgataataatttggtagagcttgaatcaagaattaaagttcttatg
aaaaataaagacggagaggaagaatttattgaaacttctgtgggaagattaaaattcaat
gaagttattcctgaagattttagatatcaaaacagagattttaacagtaaagatttagct
aagtttattcatgaagtatatttgaaacatggtacagcagtaacagttaatatgcttgat
gatattaaagaacttggttatcaaagtgctacagtattcggttctactatttctattgct
gatatacttattcctccaatgaaaaaacatgaaatagaggaagctactaaacaggtagag
tttattgaaaatcagtatatgaacggtattattactactgatgagaaaaaacagaaagtt
atggacctttggactactgttgaaggtagaataactgaagctatgatggataacttaaga
caggatcaggacggatttaaccctgtatacataatggctgattctggtgcgagaggttct
aaacagcagataagacagcttgctagtatgagaggtttgatggctaagccttccggtgag
attatcgaacttcctattatttctaactttaaagaaggtcttactgtacaggaatacttt
atttctactcacggtgctagaaaaggtcttgccgatactgccttaaaaacttcaagtgct
ggttatcttactagaaaattagttgacgttgcaataggggttgttgtttcagagcatgac
tgcggtactgttaaaggtattgctatagaagccataaaaaacggagatgaaatcaaaaaa
tctcttaaagagcgtgttgttggtttcttcacaagtgaacatatatatcatcctgttact
aaagagcttatatgttcagctaatactgaaattacagaagaattaggtgatttaatagag
aaatctggtatagaaaaaatcagcataagacatcctcttacttgtgaaagcagaatgggg
gtatgtcagaaatgttatggaagaagcttatctactaataatttagcttctataggtgag
gctgttggtgtagttgctgctcaaagtattggtcagcctggtactcagcttacaatgaga
actttccacatcggtggtgttgctactcagatggtagaagaaaacgaaattaaagttaac
taccctatatatattgaacaattctctaactatgttgttcagcctaatggtgttaaaatc
acagctagaaaaggtgatttaattatcagaagagttttagagaaatgggaaaaatctaca
ttaaaagatattttaactgaacagaatactaaagttcttataggtgatgttatagctact
cttaaagacggtacagaaattaaagctactcataatggtactttcaaaatcactgatgat
gataaatatataatgattacaggtgataagcacacaattgtaattaaagttggaagtgag
tataaagttgatgaacatgtattcatagaacctaatactgttatagctagctttgataca
tataacgagcctatcatttcagaaaaagctggtatagtaagatggcaggacatcattcct
ggaagaacattagttgaatctatagacgatcaaacaggaaacgtaactaatattattcaa
gagtttaaagatgctagtatgcagcctaaaatcttgattacaggtgagggagatcctttt
gaaactgacatacctaatggtgctcagcttctagttgaaaacaaccaaagagttgaaata
ggagaggttattgctaaaactactcgtatacagcagaaaagtagggatattacaggaggt
cttccaagagtacaggaattgcttgaagctcagaaacctaaggatactgctattattgct
ggtattgacggtgaggttgaaataggcggttctcataagggtaaaaaagtagttaaaatc
agaaatgaatttgatgaaactaaacacttagtacctcatggtaaaatgcttcttgttaga
aacggcgaccaagtaaaaacaggtactcaattatgtgctggtaagataaaccctcatgat
atattggaaactcagggagatttggctttacaaacttatttgcttgaagaaattcagaca
gtatacaatcagcagggtgtaggtattaacgataagcacttcgctcttatcataagacag
atgcttagaagacttgaaattactgatccgggcgatactaaatatattgttggtcagtat
gttgataaatatgagtttgaagaagaaaacagacgctatgaagaggctggcggttctcct
gcaagcggtaagcctgtacttttaggattaactaaagccgctcttaatactgaaagcttt
atatcttctgcttcattccaagaaactactaaggtattgactaatgctgctattaaagga
aaggttgataaattgcttggattaaaagaaaatgttattataggacacttaatacctgcc
ggtactggtgttaaattgtataacaaacttcatgtctacaacaagcaaagcggagacttg
gataagaaagataatatagataatagtgctaaagaagaagaggttatgcaaataactgta
taa
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