Brevundimonas intermedia: ACETKC_12235
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Entry
ACETKC_12235 CDS
T10735
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bir Brevundimonas intermedia
Brite
KEGG Orthology (KO) [BR:
bir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bir03016
]
ACETKC_12235
Enzymes [BR:
bir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ACETKC_12235
Transfer RNA biogenesis [BR:
bir03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ACETKC_12235
Prokaryotic type
tRNA splicing ligases
ACETKC_12235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
RTC_insert
DUF4514
Motif
Other DBs
NCBI-ProteinID:
XGI85452
LinkDB
All DBs
Position
2487928..2489145
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AA seq
405 aa
AA seq
DB search
MSGYDVIEGSGAPIKAWTRGVPIEDAALKQLKNVASLPFIHKHVAVMPDVHWGMGATVGS
VIPTVGAIIPAAVGVDIGCGMMAVRTSIRAEHLPDDLSAIRSAIEAAVPHGRTDNGGRND
KGAWAAEPPASAVTRWADLKTGYDAVVEKHPKAAHPRGFGHLGTLGTGNHFIELCLDEAG
DVWVMLHSGSRGVGNRFGTYFIERAKHEMRRWHINLPDQDLAYFPEGTDGFVDYVRAVSW
AQKYARANREVMMDSVLGVLKAFWPDLKTTQEAVNCHHNYVSKEKHFGKDVFLTRKGAVS
AKDGELGIIPGSMGAKSFIVRGKGNADSFCTCSHGAGRAMSRTEAKRRFTIEDHVRATEG
VECRKDAEVIDETPMAYKDIDAVIAAQTYLIEVVHTLRQVVCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggctatgacgtgatcgaagggtcgggcgcgccgatcaaggcgtggacccgaggg
gtgcccatcgaggatgcggcgctgaaacagctgaagaacgtggcctcgctgccgttcatc
cacaaacacgtcgcggtcatgcccgacgtgcactggggcatgggcgccacggtggggtcg
gtgatcccgaccgtgggggccatcatcccggccgccgtgggtgtagacatcggctgcggc
atgatggcggtgcggacctcgatccgcgccgaacacctgcccgacgacctgtcggccatc
cgctccgccatcgaggcggccgttccgcacggtcgcaccgacaatggcgggcgcaacgac
aagggcgcctgggccgccgaaccgccggcctcggccgtgacgcgctgggccgatctgaag
acgggatatgacgccgtggtcgagaaacaccccaaggcggcgcacccgcgcggcttcggc
cacctgggcacgctgggcacgggcaaccacttcatcgagctgtgcctcgacgaggcgggc
gacgtctgggtgatgctgcactccggctcgcgcggcgtgggcaaccggttcgggacctat
ttcatcgaacgggccaagcacgagatgcgccgctggcacatcaacctgcccgaccaggac
ctggcctatttcccggaagggacggacggcttcgtcgattatgtgcgggcggtgtcgtgg
gcgcagaaatacgcgcgcgccaaccgcgaggtgatgatggacagcgtgctcggggtgctg
aaggccttctggccggatctgaagacgacgcaggaggcggtgaactgccaccacaactac
gtctcgaaggagaagcatttcggcaaggacgtcttcctgacccgcaagggggccgtatcg
gccaaggacggcgaactgggcatcatccccggctctatgggggcgaagtccttcatcgtg
cgcggcaagggcaatgcggactcgttctgcacctgctcgcacggcgccggtcgggccatg
agccggaccgaagccaagcgccgcttcacgatcgaggaccacgtccgcgccaccgagggc
gtggaatgccgcaaggacgccgaggtaatcgacgaaaccccgatggcctataaggacatc
gacgcggtcatcgcagcgcagacctacctgatcgaggtcgtgcacaccctgcgtcaggtg
gtgtgcgtcaagggatga
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