Brevundimonas intermedia: ACETKC_14500
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Entry
ACETKC_14500 CDS
T10735
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bir Brevundimonas intermedia
Pathway
bir03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ACETKC_14500 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bir03400
]
ACETKC_14500 (ligD)
Enzymes [BR:
bir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ACETKC_14500 (ligD)
DNA repair and recombination proteins [BR:
bir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ACETKC_14500 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
XGI85881
LinkDB
All DBs
Position
complement(2944720..2947278)
Genome browser
AA seq
852 aa
AA seq
DB search
MANGLEAYKAKRDFTRTPEPAGKAKSARKGRLTYLIQRHAATRLHYDFRIEHDGVLKSWA
VTKAPSRDPAVKRLAVEVEDHPLDYGGFEGTIPSGNYGAGTVQLWDRGEWEPQEPDIEAA
LKRGSLKMTLHGERLSGGWALVRLKSDRGKPSKRNNWLLIKEKDEAAVPGEGDANMEIDA
SVASGRSLAEIAEGNTQWTTSRPVARKGPAKPKAKSGEATLAKPPAFVPIQLCKVADHPP
GGAGWVHEIKFDGYRIQVATGGGQARLYTRRGHDWTDRFPELAADAAAWPDGVVDGELCA
MSEDHTPDFSALQAAIADGKTSELVYFAFDLLREGEDDLRDLPLSHRKARLQAHVDRVPA
KARKRLRYVDHFASTGQAVLDSACRMDLEGVISKTLDAPYRAGRSSTWVKSKCRGRDEVV
IGGWSSEGGTRFRSLLVGVAGEDGLRYLGRVGTGYAAPLLKTLLPALKEAAAEASPFVGK
GAPRGGKDIHWVKPVLVAELEHGGLTEGGSLRHAAFKGLREDKPAQDVNDDPQAPVAAKP
AVRKTKTASTSSPGKVVVAGVTLSKPDKILWPAAGGRAAITKADLARYYEAAAERILPHV
ADRPVSIIRAPDGIEGETFFQRHAMPGSNPRLKLIDVHQRHPYVAVTDVGGLVAVAQSGG
LELHPWGCRPGDPETPEQVTFDLDPDEGLDFAAVIAAAKTVKAELEKRGLHPFVKTTGGK
GLHVVVPIRSDGRSRIEWDQCKAFAKAISEEVRRADPERFTTTLAKKARGGKIFIDYLRN
GRMATAVAPWSVRARPGAGIAFPLSWGQVKAGLDPKAFTLHDAPALLKKADPWKGFRAGE
VSLRPVLKAMGL
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacggacttgaggcctacaaggccaagcgggacttcacccgcacgccggaaccg
gcgggcaaggccaaatcggcccgcaagggccggctgacctatttgatccagcgccatgcc
gcgacgcggcttcactacgacttccgcattgagcacgatggggtattgaagtcgtgggcg
gtgaccaaggccccctcgcgcgatcccgccgtcaaacgtctggcggtggaggtcgaggat
cacccgctcgactatggcgggttcgaggggaccatcccctccggcaactatggcgccggc
acagtccagttgtgggatcgcggcgaatgggagccccaggagccggacatcgaggcggcc
ctgaagcgcggctcgctgaagatgaccctgcacggcgaacgtctcagcggcggctgggcc
ttggtccggctcaagtccgaccggggcaagccatccaagcgcaacaactggctgctgatt
aaggaaaaggacgaggcggccgtgccgggcgagggcgacgccaatatggagatcgacgcc
tccgtggcctcgggtcgcagtttggctgagatcgccgagggcaacacgcaatggaccacg
tctcgccccgtcgcgcgcaaggggccggccaagcccaaggcgaaatcgggcgaggcgacc
ctggcgaagccgcccgccttcgtccccatccagctgtgcaaggtcgccgatcatcccccc
ggcggcgcaggctgggtgcatgagatcaagttcgacggctaccgcatccaggtggcgacc
ggaggcgggcaggcgcgactctacacccgacgcggccacgactggaccgatcgctttcct
gaactggcggcggatgcggcggcctggcccgacggggtggtggacggcgagctgtgcgcg
atgagcgaggatcacacgcccgacttctcggccctgcaggcggccatcgcggatgggaag
acgagcgaactggtctatttcgccttcgacctgctgcgcgagggtgaggacgatctgcgg
gacctgcccctgtcgcaccgcaaggcgcggcttcaggcccatgtcgaccgcgttccggcc
aaggcgcgcaaacggctgcggtatgtggatcacttcgcctcgaccgggcaggcggtgctg
gacagcgcctgccgcatggatctggaaggcgtgatctccaagacgctggacgccccttat
cgggcgggtcggtcctcgacctgggtcaagtccaaatgtcggggccgcgacgaggtggtg
atcggcggctggtcgtccgaaggcgggacgcggtttcggtcgttgcttgtcggcgtggcc
ggtgaagacgggctgcgctacctcggccgggtcggcacgggctatgccgcgccactgttg
aagaccttgttgccggccttgaaggaggcggcagccgaggcctctcctttcgtgggcaag
ggcgcgccgcgtggcggcaaggacatccattgggtcaagccagtgctcgtcgccgagctg
gaacacggcggcctgaccgagggcgggtcgttgcggcacgcggccttcaaggggctgcgc
gaggacaagccggcccaggacgtgaacgacgatccgcaggcgcctgtggccgccaagccc
gccgtccggaagaccaagaccgcttcaacctcctcacctggcaaggtcgtcgtcgctggg
gtcaccctgtccaagcccgacaagatactgtggcccgccgccggcggccgggcggcgatc
accaaggctgatctggcgcgctattacgaggcggcggcggagcggattctgccccacgtc
gccgaccggccggtctcgatcatccgagcgccggacggcatcgagggcgagaccttcttc
cagcgccacgccatgccggggtccaacccccgcctgaagctgatcgacgtccatcaacgc
catccctatgtggccgtcacggatgtcggcggcctggtcgccgtcgctcagtcgggcgga
ctggagcttcacccctggggctgtcggccgggcgatcccgagacgcccgagcaggtaacc
ttcgacctcgacccggacgaaggcctggatttcgcggcggtaattgcggcggccaagacg
gtgaaggctgagctggaaaaacggggtctgcatcccttcgtcaagacgaccgggggcaag
gggcttcatgtcgtcgtcccgatccgttccgacggccgcagccgtatcgaatgggaccag
tgcaaggccttcgccaaggcgatctccgaggaggtgcggcgcgccgatcccgaacggttc
accaccaccctggccaagaaggcgcggggcgggaagatcttcatcgactatctgcgcaac
ggccgcatggccacggcggtggcgccttggtcggtgcgtgctcggccgggtgcggggatc
gcctttcccctgtcctgggggcaggtcaaggccgggctcgatcccaaggccttcaccctg
cacgacgcgcccgccctgctgaagaaggccgacccatggaagggttttcgcgcgggggaa
gtcagtctgcgccccgtgctgaaggccatgggactatag
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