Bacteroides intestinalis: DXK01_003995
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Entry
DXK01_003995 CDS
T06090
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bis
Bacteroides intestinalis
Pathway
bis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DXK01_003995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bis03019
]
DXK01_003995
03009 Ribosome biogenesis [BR:
bis03009
]
DXK01_003995
Enzymes [BR:
bis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DXK01_003995
Messenger RNA biogenesis [BR:
bis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DXK01_003995
Ribosome biogenesis [BR:
bis03009
]
Prokaryotic type
rRNA helicases
DXK01_003995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
RecG_N
Ig_Tie2_1
Motif
Other DBs
NCBI-ProteinID:
QDO68135
LinkDB
All DBs
Position
1142736..1144715
Genome browser
AA seq
659 aa
AA seq
DB search
MKNFEELGLSPEIRRAIEEMGYECPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP
LIQKINVKNRIPQSLILCPTRELCLQIAGDLNDYSKYITGLRVLPVYGGSSIDSQIRALK
QGVHIIVATPGRLLDLMERKTVSLTTIQNVVMDEADEMLNMGFTDSINAILADVPQERNT
LLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVVFTVHAKDKYAALKRIVDYY
PQIYGIIFCRTRKETQEIADKLMQDGYNADSLHGELSQAQRDAVMQKFRIRNLQILVATD
VAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREIERI
ISKKFIIGEMPTGKQICEKQLLKVIDNLEKVKVNEEDMADFMPEIYRKLDWLSKEDLIKR
MVSHEFNRFSEYYRNREEIEMPTDSRGERKSRSDNERSGDRRSSSRKAEPGFTRLFINLG
KMDNFFPNELISLLNSNTRGRVELGRIDLMKNFSFFEVDEKEAGNVVKALNRANWNGRKV
SVEIAGEEGKETPKGRRKSEGSSYGKKEFDGKKRSFKDEKRSDTSGKRNDTPRNSRSKSD
NAPTDKKKGKPSREERGYTSARGKKDDWRQFFQNDNKEFRDKEPDFSEEGWARRAPKKK
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgaagaattttgaagagctcggtctgtcgccggagatacgccgcgccattgaagaaatg
ggatatgagtgtcccatgccggtacaagaggaagtgattccttaccttttaggagaaaat
aatgatgttgtagcacttgcacaaacaggaacggggaaaaccgccgcattcggcctgcca
cttatccaaaaaattaatgtaaagaaccggattccacaatcccttatactttgccctaca
cgcgaactttgcttgcagattgcaggtgatttgaatgactattccaaatacatcactgga
ttgcgggtgttgcccgtatatggtggttcatccatagatagccagatacgtgccctgaaa
caaggtgtacatatcatcgttgccaccccgggacgactactcgacctgatggaacgtaag
actgtatcgctcaccactatccagaatgtagtgatggacgaggcggacgaaatgctgaac
atgggattcacggacagtattaacgctattcttgccgatgtgcctcaggagcgtaatacg
ttattattctctgccactatgagcccggagattgcacgtatctcaaagaaatacttacgt
gacgccaaagaaatcactatcggacggaaaaatgaaagtacaagtaacgtgaagcatgta
gtcttcaccgttcatgccaaggataaatacgcggctctgaaacgtattgtagactattat
ccgcagatatacggtatcattttctgccgtacgcgcaaagaaacgcaggaaattgccgac
aagttgatgcaggacggttacaatgccgattcactgcacggtgaattaagtcaggcgcag
cgtgacgccgtaatgcagaaattccgcatccgtaatctgcaaatcctggttgccacggac
gttgctgcacgcggactcgacgtagacgacttgacacatgttatcaactatggtctgcca
gatgataccgaaagttacacccaccgtagcggacgtacaggacgcgccggaaagaccggt
acttctatcgccatcatcaacttgcgcgaaaaaggtaagatgcgcgaaatagaacgtatc
atcagcaagaagtttattattggtgaaatgcctaccggcaaacagatttgcgagaaacag
ctcctgaaagtgattgacaatctggaaaaggtgaaagtgaacgaagaagacatggctgac
tttatgcctgaaatataccgtaaactggactggttgagcaaagaagaccttatcaaacgt
atggtttcccacgagttcaaccgtttctcagaatattaccgcaatcgcgaagaaatagaa
atgcctaccgatagccgtggcgaacgcaaaagcagaagtgacaatgaacgcagtggtgac
cgcagaagtagcagccgcaaagctgaaccgggatttacgcgcctgttcatcaatctgggt
aagatggataatttcttccccaatgaactgatcagtcttctgaacagtaatacccgtggt
cgtgtggaactgggacgtattgatctgatgaagaacttctcattttttgaggtagacgag
aaagaagcgggaaatgtagtaaaagctttaaaccgagccaactggaacggtcgtaaggtt
tctgtggagattgccggcgaagaaggcaaggaaactcctaaaggcagacgtaaaagcgaa
ggaagcagttacggaaaaaaggagtttgatggcaagaagcgtagcttcaaagacgaaaaa
cgcagtgatacatctggaaaacgtaacgatacgcccagaaacagtagaagtaaatctgac
aatgctccgactgacaaaaagaaaggcaaaccgagccgcgaagaacgtggctatactagt
gcccgtggcaagaaagacgattggaggcaattcttccaaaatgacaataaggagttccgc
gataaagaacctgacttcagtgaagaaggttgggcaagacgggcacccaaaaagaaataa
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