Bacteroides intestinalis: DXK01_011680
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Entry
DXK01_011680 CDS
T06090
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
bis
Bacteroides intestinalis
Pathway
bis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DXK01_011680 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bis03019
]
DXK01_011680 (rny)
Messenger RNA biogenesis [BR:
bis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DXK01_011680 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
DUF2570
KH_2
Fez1
DUF641
Motif
Other DBs
NCBI-ProteinID:
QDO69540
LinkDB
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Position
complement(3210016..3211551)
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AA seq
511 aa
AA seq
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MTVTILVSIACFIIGGFLSYMFFKHGLKSKYDNILKEAEAEAEVIKKNKLLEVKEKFLNK
KADLEKEVAIRNQKIQQAENKLKQRELVLNQRQEEIQRKKSEAEAVKENLEAQLVIIDKK
KDELDKLQQQEIEKLETISGLSADEAKERMIESLKEEAKTQAQSFINDIMDDAKLTASKE
AKRIVIQSIQRVATETAIENSVTVFHIESDEIKGRIIGREGRNIRALEAATGVEIVVDDT
PEAIVLSAFDPVRREIARLALHQLVTDGRIHPARIEEVVSKVRKQVEEEIIETGKRTTID
LGIHGLHPELIRIIGKMKYRSSYGQNLLQHARETANLCAVMASELGLNPKKAKRAGLLHD
IGKVPDEEPELPHALYGMKLAEKFKEKPDICNAIGAHHDEVEMTSLLAPIVQVCDAISGA
RPGARREIVEAYIKRLNDLEQLAMAYPGVTKTYAIQAGRELRVIVGADKIDDKQTENLSG
EIAKKIQDEMTYPGQVKITVIRETRAVSYAK
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgacagtaacaatactagtatccattgcctgtttcattatcggtggatttctgtcgtac
atgttcttcaagcacggtttgaagtccaaatatgacaacattctgaaagaagccgaggct
gaagcggaagtgattaaaaagaataagttgctcgaagtaaaggagaagttcctgaacaaa
aaagcagacttggagaaagaagtagcgatccgtaaccagaaaattcagcaagcggagaac
aagttgaaacaacgtgagttggtgctgaaccaacgccaagaagagatacagcgtaagaaa
tcagaagctgaagcggtgaaagaaaacctggaagcccaactggttattatcgacaagaag
aaagacgaactggataaactgcaacagcaggaaattgaaaaactggaaaccatttccggt
ctttcggccgacgaagccaaagaacgtatgatcgagtctttgaaagaagaagccaagacg
caggcccagtccttcatcaacgacatcatggacgatgccaagctgactgccagcaaagaa
gcaaagcgtattgtaatacaatccatacagcgtgtagctacggaaactgccatcgaaaat
tcagtgaccgtattccacattgaatcagacgaaatcaagggacgcattatcggtcgcgaa
ggccgcaatatccgtgcgcttgaagccgcaacaggtgtggaaattgtggtagatgatacg
cccgaagctatcgtattatcagctttcgaccctgtacgtcgtgaaatagcccgcttggca
ctgcatcagttggtgactgacggacgtatccacccggcacgtatcgaagaagttgtatct
aaggtacgcaagcaagtggaagaagaaatcatcgaaaccggtaaacgtactacgattgac
ctcggtatccatggtttgcatcctgaactgatccgtattatcggtaagatgaaatatcgt
tcttcttatggtcagaacctgttgcagcatgcccgcgaaacagccaacctctgcgctgtg
atggcatcggaactgggtctgaaccccaagaaagcaaaacgtgccggattgctgcatgat
atcggtaaagtgcccgatgaagaaccggaattgccgcatgcactctatggtatgaagctg
gctgagaaattcaaggaaaaaccggatatctgcaacgctatcggtgcccaccacgatgaa
gtggagatgacgagccttctggcacccatcgtacaggtatgtgatgctatctcaggtgcc
cgtccgggagcacgccgcgaaattgttgaagcttacatcaagcgactgaacgatctggaa
cagttggcaatggcctatccgggtgtgacgaagacgtatgctatccaggcaggtcgtgag
ttgcgcgtaatcgttggtgccgataagattgacgacaagcagactgaaaacctttccggt
gaaatcgcgaagaagatacaggatgagatgacgtatccgggacaggtgaagatcacagta
atccgtgagacacgcgcagtaagttatgcgaaataa
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