Bacteroides intestinalis: DXK01_011995
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Entry
DXK01_011995 CDS
T06090
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bis
Bacteroides intestinalis
Pathway
bis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DXK01_011995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bis03019
]
DXK01_011995
Enzymes [BR:
bis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DXK01_011995
Messenger RNA biogenesis [BR:
bis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DXK01_011995
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_19
Utp25_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QDO71576
LinkDB
All DBs
Position
3268299..3269744
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AA seq
481 aa
AA seq
DB search
MTFKQMNISEPVCRALLEKNYSTPTLIQEQAIPEALTGRDLLGLAQTGTGKTAAFAVPII
EQLLAAPMPQRKGAPRSIRALILTPTRELAIQIDESLADYTRYTTLRHTVIFGGVKQKSQ
TDELRAGTDILTATPGRLLDLMSQGFIRLDDVRHFVLDEADRMLDMGFIHDVKRLLPKLP
PKKQTLFFSATMPDSIDRLAKSLLHNPARVEVTPASSVVEIISQSVYRVEKPQKKELLAQ
LLLGEAGHQVLVFSRTKHGADNIARYLSRRGIACESIHGDKSQNARQRALSNFKEGRSNV
IIATDIAARGIDIKGLDLVLNFDLPDVPETYVHRIGRTGRAGCEGRAIAFCSSEEAPMLR
EIEKLTGIKLVQQKHNLPSLGEPAASPTTSSTPNVAPKSQSRTQGGRPQNNRRREDRKRP
VEPTGSTQKAVVSAEKPKRNNNRPERPRPVQQSGQKKSGSGKPEPSPKSPAKLRSRYENY
D
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaacagatgaatatttcggagccggtgtgccgtgcgctcctcgaaaaaaac
tattctacccctacacttatccaagaacaagctatacccgaagccctgactgggcgtgat
ttgttgggactggcgcaaaccggaactggcaaaaccgccgctttcgccgtacccatcatc
gagcaattgcttgccgctcctatgccccaacgcaaaggtgctccgcgtagcatccgtgcg
cttatcctgactccaacccgggagttggcgattcagattgatgaatcgttggcggactat
acacgctatacgaccttgcgccacacggttatcttcggcggagtgaaacaaaagtcgcaa
accgatgaacttcgtgccgggacggacatcctgacggctactcccggacgcctgctcgac
ctgatgtcgcaaggctttatccgcctcgacgatgttcgccacttcgttcttgatgaggcc
gaccgtatgctcgacatgggatttatccatgacgtcaaacgcctcttgcccaagctcccg
cccaagaagcaaacccttttcttctcggccaccatgcccgatagtatcgaccgtcttgcc
aagagtttgttgcacaatccggcgcgtgtggaagtaactccggcatccagtgttgtggag
attatcagccagtccgtctaccgggtagagaaacctcagaagaaagaattgttggctcaa
ttgttgctcggagaggcaggccatcaggtgctggttttctcccgtaccaagcatggggcg
gataacattgcccgctacctgtctcgtcgtggcattgcttgcgaaagcatacatggagac
aagtcacagaatgcccgccaacgtgcgttgagcaactttaaggaagggcgctccaatgtg
attattgctacggatattgctgcccggggcatcgatataaaaggtctggacctggttctc
aattttgatttacctgatgttccggagacctacgtgcaccgtatcggacgtactggacgt
gcgggttgcgaaggacgtgccattgctttttgctcaagcgaagaagcccccatgttacgt
gagatagagaaacttacgggtataaagctggtgcaacaaaagcacaatttgccttctttg
ggagagcctgccgcttctcctactacttcttctaccccaaacgttgcacccaaatcgcaa
agccgcactcagggaggaagacctcagaacaatagaaggcgggaggacagaaagagaccg
gtcgaaccaaccggaagcactcaaaaggcggtggtatctgccgaaaagcccaagcggaat
aataaccgtcctgaaagacctcgacctgtccagcaatccgggcaaaagaagtcgggttca
gggaagccggagccatcacccaaaagtccggcaaagttgcgttcgcgctacgaaaactat
gattga
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