Bacillus spizizenii T30: BIS30_08260
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Entry
BIS30_08260 CDS
T05513
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bit
Bacillus spizizenii T30
Pathway
bit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BIS30_08260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bit03021
]
BIS30_08260
03019 Messenger RNA biogenesis [BR:
bit03019
]
BIS30_08260
Transcription machinery [BR:
bit03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BIS30_08260
Messenger RNA biogenesis [BR:
bit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BIS30_08260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
OB_RNB
ATPase_2
AAA_22
AAA
NACHT
EZH2_WD-Binding
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AJW85154
LinkDB
All DBs
Position
complement(1558459..1559742)
Genome browser
AA seq
427 aa
AA seq
DB search
MKDVSISSLENMKLKELYELARHYKISYYSKLTKKELIFAILKANAEQEDLLFMEGVLEI
IQSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLHVEA
VNGDDPESAKERVHFPALTPLYPDRQMVLETKPNFLSTRIMDMMAPVGFGQRGLIVAPPK
AGKTMLLKEIANSITANQPEAELIVLLIDERPEEVTDIERSVAGDVVSSTFDEVPENHIK
VAELVLERAMRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAIDIR
RSGTRKEELLVPKEHLDRLWSIRKTMSDSPDFAEKFMRKMKKTKTNQEFFDILNQEWKQA
NLSSARR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacgtatctatttcatctttggaaaatatgaaattgaaagagctttatgaactt
gcaagacattataaaatctcctattacagcaaactgacaaaaaaagaactcattttcgcc
attctgaaagcaaatgcagaacaggaagatctgctgtttatggaaggtgttcttgagatc
atccagtccgaaggtttcggtttcctgagaccgatcaactactctccaagctcagaggac
atttacatctcagcttcacaaatccgccgtttcgatttgcggaacggagacaaagtatcg
ggcaaggttcgcccgccaaaagaaaatgagcgttactatggacttttgcacgttgaagca
gtaaacggggatgatcccgaatcagcaaaagagcgtgtgcatttcccggctcttacacct
ctttatccagaccgtcaaatggtgcttgaaacaaagccaaacttcttgtctacaagaata
atggacatgatggcaccggttggatttggacagcgcggtttgattgttgcgcctccaaaa
gccggaaaaacgatgctgctgaaggaaattgccaacagcattacagcaaaccagcctgaa
gcagagctcatcgtgcttttgatcgacgaaagaccagaggaagtgaccgatatcgagcgt
tccgtagctggggatgtcgttagctcaacgtttgatgaagtgccggaaaaccatattaaa
gtggccgagcttgtgcttgagcgcgcgatgcgtctcgtggaacacaaaaaagatgtcatc
atcctgatggacagcatcacacgccttgcccgcgcctacaacttagtgattccgccgagc
ggaagaacgctttctggggggattgatccagcagcgttccaccgtccgaaacgcttcttc
ggggctgcgagaaatatcgaagagggcggcagcttaactatccttgctacggctcttgtt
gatacagggtcacgtatggatgatgtcatttatgaagaattcaagggaacaggcaacatg
gagcttcaccttgaccgttctctggcagagcgccgcatcttcccggccatcgatatccgc
cgttcgggaacgcgcaaggaagagctgcttgtgcctaaagagcaccttgatcgtttatgg
tctatccgcaaaacgatgtctgattcacctgatttcgcagaaaaattcatgagaaaaatg
aaaaaaaccaaaacaaaccaggaatttttcgatattctcaatcaagaatggaaacaggca
aatctatcatctgctagacgataa
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