Bos indicus (zebu cattle): 109553917
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Entry
109553917 CDS
T04792
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
109553917 (COL13A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
biu00536
]
109553917 (COL13A1)
Glycosaminoglycan binding proteins [BR:
biu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109553917 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
109553917
NCBI-ProteinID:
XP_019809776
UniProt:
A0A6P5AZ71
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Position
28:25327423..25484013
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AA seq
794 aa
AA seq
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MVAERSRKATAAXARGPAELDAPGTVALAVAPAERCARLPXPGSCGLLALALCSLALSLL
AHFRTVELQARVLRLEAERGEQQMEPAILGRVNQLLDEKWKLHSRRRRETLKTSPGCHCP
PGPPGPAGRPGLPGDKGAIGMPGRVGGKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGFP
GFPGPIGLDGKPGRPGPKGEMGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTF
QGEQGQAGIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGE
RGMPGMPGKHGTKGEPGIPGAKGEKGAAGSPGPLGLLGQKGEKGDAGNSIEGGRGEPGLP
GPPGPPGPKGEAGADGQPGPPGEQGDKGEPGPAGEQGPTGPKGSKGETGKGEMVDYNGNI
NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGEKGEIGLPGPPGLDGEKGPRGKPGDVGP
PGPQGPPGKPGPAGMKGEDGLPGSPGEKGEKGETGQPGPPGLDGPTGEKGEPGDQGRPGA
TGLPGPIGLPGFIGEKGEPGEKGDPGMEVPGPPGPEGPPGPPGLQGVPGPKGEAGLDGAK
GDKGVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPX
GAAGLPGLHGPPGDKGNRGHRGFKGEKGEPGLPGLDGLDAPCPLVWHHPPLPAWPVWPSS
RVWFVPVCLSNCPPHSCSLHLASASHLFTLWTPRVTLPWLALRGSCTAPSCMQSLPGGFF
FFLLQPLQKPITLM
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggtagcggagcgctcccgcaaagcgacagccgcckgtgcccgcggccctgcggagctg
gacgcacccgggacagtggcgctggcggtggcgccggcggagcgctgcgcgcggctgccg
agnccggggtcgtgcgggctgctggcgctggccctctgctcgctggcgctcagcctgctc
gcccactttcggacggtcgagctgcaggcccgggtgctgcgcctggaagcggagcgtggg
gagcagcaaatggagccggctattttgggacgagtcaaccaactgctggatgagaaatgg
aagctccactcacggaggcgccgggagaccctgaagacatccccaggatgtcactgcccg
ccagggcctcctggtcctgctggaagacccggcctccccggggacaaaggtgccattggg
atgcctggacgtgtgggaggaaagggccaaccaggcgagaagggtgccccaggagatgcc
ggcatgtccatcattggtccccgcggcccccccggtcagccgggcacccggggttttcca
ggatttccgggtcccattgggctcgacggcaaaccgggccggccgggaccaaagggggag
atgggacctcaaggacaaaagggagaaaagggtcagtgtggcgagtacccacaccggctg
ctgcctctcctcaattcagtgcggctggctccacccccagtcattaaaaggcggaccttc
cagggtgaacagggccaggctggcatccaaggcccaccagggccaccaggccctcccgga
ccgagtggacctctggggcacccaggactgccagggcccatggggccaccaggcttacct
gggcctcctggaccaaagggagacccagggatccagggctaccacggccggaagggagaa
cggggaatgccagggatgccgggcaaacatggaacaaagggtgaacctgggatcccagga
gccaagggtgagaagggggctgcggggtcccccgggccactcggcctcttggggcagaag
ggagaaaaaggcgatgctggcaactccattgaaggaggcagaggggagcccggtctccca
gggcctcctggacccccagggccaaagggggaagctggagcagatggccagccaggcccc
ccaggagagcaaggagacaagggggagcctggaccagctggagaacagggacctactggc
cccaagggctccaagggcgaaactgggaaaggagagatggtggactacaacggcaacatc
aacgaggctctccaggagatccggacactggccttgatggggccccctggtcttcctggg
cagatcggcccacccggagctccagggatcccaggcgagaagggggagattggactgcca
ggccctcccggactcgatggggaaaagggacctcgaggcaaaccaggagatgtgggccct
cctggyccccaaggccccccaggaaagcctgggcctgcaggaatgaagggagaagacggc
ctcccggggagcccaggagagaagggggagaaaggggagacggggcagccgggaccaccg
ggtctagacggcccaactggggagaaaggagaaccaggtgaccaagggagacccggagcg
actggacttcctggcccaatcgggctcccaggatttataggagagaaaggagaaccaggg
gagaagggtgacccaggaatggaggttcctgggccaccagggccagaggggcctcctgga
cctccggggctccaaggcgttcctggaccaaagggggaagcaggactagacggagcaaaa
ggagacaagggcgtccagggagaaaaaggagaccgaggtcctctgggattacccggagct
tcaggtttggacggcaggcctgggccaccgggtactccaggaccaatcggagttccaggc
ccagcgggaccaaagggagagaggggcagcaaaggtgaccctgggatgacaggaccaayg
ggagcagctgggcttcctggtttacacggaccacccggggacaaaggaaaccggggacac
cgaggttttaaaggagagaaaggggagccggggttaccagggctggacggactggatgcc
ccgtgcccattggtatggcatcaccctcccttgcctgcatggccagtatggccttcctca
cgtgtgtggtttgtgcctgtgtgcctctccaactgccctccacactcctgctccctccat
ctggcctccgcttcccacctcttcactctgtggacaccaagggtcaccctgccttggctg
gccctcaggggctcctgcacagccccctcttgcatgcaaagtctgccaggaggcttcttt
ttcttcctcttgcagccgcttcaaaagcccatcaccttaatgtga
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